CATH / SCOP Mapping

This page shows the 1664 consensus superfamily pairs that have been identified by the SCOP/CATH mapping. A consensus superfamily pair is a pair of a SCOP superfamily and a CATH superfamily that have been identified as being similar to each other. These pairwise relationships have been split into 3 categories according to how well the CATH and SCOP superfamilies overlap: Gold, Silver, Bronze.

Gold standard consensus indicates a pair of SCOP and CATH superfamilies that display consistently highly similar approaches to both domain boundary assignment and homology detection.

Download all "gold" entries as: csv | json

CATH Superfamily	SCOP Superfamily	# CATH domains	# SCOP domains
1.10.8.110 Photosystem I PsaF, reaction centre subunit III	f.23.16 Subunit III of photosystem I reaction centre, PsaF	15	1
1.10.8.130	a.8.2 Plasmid maintenance system epsilon/zeta, antidote epsilon subunit	8	2
1.10.8.200 Replisome organizer (g39p helicase loader/inhibitor protein)	a.179.1 Replisome organizer (g39p helicase loader/inhibitor protein)	3	3
1.10.8.370	a.8.9 Coronavirus NSP7-like	5	5
1.10.8.500	a.274.1 HAMP domain-like	34	4
1.10.8.570	a.249.1 YfmB-like	2	2
1.10.8.600	a.251.1 Phage replication organizer domain	12	10
1.10.8.750	a.5.10 FGAM synthase PurL, linker domain	8	1
1.10.10.140 Cytochrome c oxidase, subunit VIb	a.51.1 Cytochrome c oxidase subunit h	62	28
1.10.10.200	a.4.10 N-terminal Zn binding domain of HIV integrase	61	18
1.10.10.250 Ribosomal protein L11, C-terminal domain	a.4.7 Ribosomal protein L11, C-terminal domain	186	105
1.10.10.400 Polyribonucleotide nucleotidyltransferase, RNA-binding domain	a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	34	3
1.10.10.430 Phosphatase 2C, C-terminal domain suprefamily	a.159.1 Protein serine/threonine phosphatase 2C, C-terminal domain	9	1
1.10.10.440 FF domain	a.159.2 FF domain	22	6
1.10.10.540 XPC-binding domain	a.189.1 XPC-binding domain	14	8
1.10.10.600 IscX-like	a.159.5 IscX-like	2	1
1.10.10.610 YehU-like	d.291.1 YehU-like	1	1
1.10.10.630 DnaD domain-like	a.275.1 DnaD domain-like	3	1
1.10.10.690 YidB-like	a.259.1 YidB-like	1	1
1.10.10.870	a.178.1 Soluble domain of poliovirus core protein 3a	2	2
1.10.10.880	a.180.1 N-terminal, cytoplasmic domain of anti-sigmaE factor RseA	2	2
1.10.10.900	a.5.8 Hypothetical protein AF0491, middle domain	6	2
1.10.10.930	a.190.1 Flavivirus capsid protein C	10	10
1.10.10.1050	a.242.1 Dcp2 domain-like	7	2
1.10.10.1270	a.7.17 Efb C-domain-like	16	12
1.10.20.20	a.38.2 Docking domain B of the erythromycin polyketide synthase (DEBS)	2	2
1.10.60.10 Iron dependent repressor, metal binding and dimerisation domain	a.76.1 Iron-dependent repressor protein, dimerization domain	94	75
1.10.60.20 Ribosomal protein S17e-like	a.4.15 Rps17e-like	57	1
1.10.100.10 Insulin-like	g.1.1 Insulin-like	40	237
1.10.135.10 ATP:guanido phosphotransferase, N-terminal domain	a.83.1 Guanido kinase N-terminal domain	144	34
1.10.150.40 Barrier-to-autointegration factor, BAF	a.60.5 Barrier-to-autointegration factor, BAF	13	13
1.10.150.50 Transcription Factor, Ets-1	a.60.1 SAM/Pointed domain	209	63
1.10.150.60 ARID DNA-binding domain	a.4.3 ARID-like	23	7
1.10.150.110 DNA polymerase beta, N-terminal domain-like	a.60.6 DNA polymerase beta, N-terminal domain-like	432	151
1.10.150.130	a.60.9 lambda integrase-like, N-terminal domain	90	61
1.10.150.170 Putative methyltransferase TM0872, insert domain	a.60.13 Putative methyltransferase TM0872, insert domain	7	6
1.10.150.190 Translation initiation factor 2; subunit 1; domain 2	a.60.14 eIF2alpha middle domain-like	14	4
1.10.150.220 CPI-17	a.165.1 Myosin phosphatase inhibitor 17kDa protein, CPI-17	4	4
1.10.150.250 Flavinator of succinate dehydrogenase	a.218.1 YgfY-like	6	1
1.10.150.260 YozE SAM-like	a.60.15 YozE-like	4	3
1.10.155.10 Chemotaxis receptor methyltransferase CheR, N-terminal domain	a.58.1 Chemotaxis receptor methyltransferase CheR, N-terminal domain	2	2
1.10.195.10 HIV-1 VPU cytoplasmic domain	g.34.1 HIV-1 VPU cytoplasmic domain	2	1
1.10.220.60 GRIP domain	a.193.1 GRIP domain	8	8
1.10.220.80 BH2638-like	a.276.1 BH2638-like	2	2
1.10.220.110	a.228.1 GDNF receptor-like	1	1
1.10.225.10 Saposin-like	a.64.1 Saposin	49	16
1.10.238.20 Pheromone/general odorant binding protein domain	a.39.2 Insect pheromone/odorant-binding proteins	166	31
1.10.238.80 MTH865-like	a.39.4 Hypothetical protein MTH865	1	1
1.10.238.120 Jann4075-like	a.279.1 Jann4075-like	4	4
1.10.239.10 Elicitin domain	a.134.1 Fungal elicitin	16	10
1.10.245.10 SWIB/MDM2 domain	a.42.1 SWIB/MDM2 domain	214	14
1.10.246.20 Coactivator CBP, KIX domain	a.12.1 Kix domain of CBP (creb binding protein)	12	3
1.10.246.100	g.84.1 Vanabin-like	1	1
1.10.260.30 Signal recognition particle, SRP54 subunit, M-domain	a.36.1 Signal peptide-binding domain	34	26
1.10.269.20	d.335.1 L,D-transpeptidase pre-catalytic domain-like	4	1
1.10.274.10 PtsI, HPr-binding domain	a.60.10 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain	18	12
1.10.287.10 S15/NS1, RNA-binding	a.16.1 S15/NS1 RNA-binding domain	452	62
1.10.287.20 Ubiquinol-cytochrome C reductase hinge domain	f.28.1 Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	66	35
1.10.287.120 Neurotoxin B-IV-like	g.2.2 Neurotoxin B-IV	1	1
1.10.287.180 Transcription elongation factor, GreA/GreB, N-terminal domain	a.2.1 GreA transcript cleavage protein, N-terminal domain	16	10
1.10.287.230	a.30.1 ROP protein	35	25
1.10.287.370	a.2.5 Prefoldin	9	3
1.10.287.650 L27 domain	a.194.1 L27 domain	17	18
1.10.287.670 Phycobilisome degradation protein NblA	a.214.1 NblA-like	22	12
1.10.287.720 Pollen allergen ole e 6	g.2.3 Pollen allergen ole e 6	1	1
1.10.287.740 Photosystem II PsbZ, reaction centre	f.17.5 PsbZ-like	45	1
1.10.287.750 SO2669-like	a.25.6 SO2669-like	12	8
1.10.287.760 YqgQ-like	a.272.1 YqgQ-like	3	3
1.10.287.1040 Exonuclease VII, small subunit	a.7.13 XseB-like	6	6
1.10.287.1080 MazG-like	a.204.1 all-alpha NTP pyrophosphatases	76	56
1.10.287.1090 Dimerisation domain of CENP-B	a.30.4 Dimerisation domain of CENP-B	4	4
1.10.340.20 Apc36109-like domain	a.230.1 YugE-like	2	1
1.10.357.20 SLC41 divalent cation transporters, integral membrane domain	f.57.1 MgtE membrane domain-like	12	4
1.10.357.40	d.336.1 YbiA-like	1	1
1.10.375.10 Human Immunodeficiency Virus Type 1 Capsid Protein	a.73.1 Retrovirus capsid protein, N-terminal core domain	213	43
1.10.400.10 GI Alpha 1, domain 2-like	a.66.1 Transducin (alpha subunit), insertion domain	151	65
1.10.437.10 Blc2-like	f.1.4 Bcl-2 inhibitors of programmed cell death	254	47
1.10.440.10 T4 endonuclease V	a.18.1 T4 endonuclease V	8	7
1.10.442.10 Cytochrome c oxidase subunit IV	f.23.1 Mitochondrial cytochrome c oxidase subunit IV	62	28
1.10.455.10 Ribosomal protein S7 domain	a.75.1 Ribosomal protein S7	388	73
1.10.472.30 Transcription elongation factor S-II, central domain	a.5.4 Elongation factor TFIIS domain 2	9	1
1.10.490.40 Diphtheria toxin, translocation domain	f.1.2 Diphtheria toxin, middle domain	12	9
1.10.490.50 Antibiotic binding domain of TipA-like multidrug resistance regulators	a.181.1 Antibiotic binding domain of TipA-like multidrug resistance regulators	1	1
1.10.520.20 N-terminal domain of the delta subunit of the F1F0-ATP synthase	a.70.1 N-terminal domain of the delta subunit of the F1F0-ATP synthase	6	2
1.10.520.30 AF1862-like domain	a.70.2 AF1862-like	11	1
1.10.532.10 STAT transcription factor, N-terminal domain	a.90.1 Transcription factor STAT-4 N-domain	9	1
1.10.555.10 Rho GTPase activation protein	a.116.1 GTPase activation domain, GAP	56	15
1.10.560.10 GroEL-like equatorial domain	a.129.1 GroEL equatorial domain-like	579	173
1.10.565.10 Retinoid X Receptor	a.123.1 Nuclear receptor ligand-binding domain	1754	497
1.10.575.10 P1 Nuclease	a.124.1 Phospholipase C/P1 nuclease	47	18
1.10.600.10 Farnesyl Diphosphate Synthase	a.128.1 Terpenoid synthases	913	79
1.10.630.10 Cytochrome P450	a.104.1 Cytochrome P450	1401	242
1.10.645.10 Cytochrome-c3 Hydrogenase, chain B	e.18.1 HydB/Nqo4-like	164	34
1.10.700.10 Dioxygenase LigAB, LigA subunit	a.88.1 LigA subunit of an aromatic-ring-opening dioxygenase LigAB	22	4
1.10.720.150	a.140.6 PRP4-like	1	1
1.10.790.10 Prion/Doppel protein, beta-ribbon domain	d.6.1 Prion-like	83	41
1.10.870.10 MHC class II-associated invariant chain, trimerisation domain	a.109.1 Class II MHC-associated invariant chain ectoplasmic trimerization domain	3	3
1.10.880.10 Transcription factor, Skn-1-like, DNA-binding domain	a.37.1 A DNA-binding domain in eukaryotic transcription factors	4	2
1.10.890.10 HNS-dependent expression A	a.57.1 Protein HNS-dependent expression A; HdeA	17	9
1.10.940.10 NusB-like	a.79.1 NusB-like	37	13
1.10.1040.30	a.187.1 HAND domain of the nucleosome remodeling ATPase ISWI	5	1
1.10.1060.10 Alpha-helical ferredoxin	a.1.2 alpha-helical ferredoxin	137	45
1.10.1090.10 Cytochrome b-c1 complex subunit 7	f.27.1 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	66	35
1.10.1100.10 TAFII-230 TBP-binding domain	a.15.1 TAF(II)230 TBP-binding fragment	1	1
1.10.1170.10 Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A	g.52.1 Inhibitor of apoptosis (IAP) repeat	262	81
1.10.1180.10 B transposition protein, C-terminal domain	a.49.1 C-terminal domain of B transposition protein	1	1
1.10.1200.10 ACP-like	a.28.1 ACP-like	181	41
1.10.1200.20 Colicin E immunity protein	a.28.2 Colicin E immunity proteins	63	33
1.10.1200.70 Glutamyl tRNA-reductase dimerization domain	a.151.1 Glutamyl tRNA-reductase dimerization domain	1	1
1.10.1200.210	a.280.1 RbcX-like	73	52
1.10.1240.10 Methionine synthase domain	a.46.1 Methionine synthase domain	24	5
1.10.1240.30 KaiA/RbsU domain	a.186.1 KaiA/RbsU domain	24	13
1.10.1240.40	a.283.1 ENT-like	5	5
1.10.1270.10 TrpR-like	a.4.12 TrpR-like	51	38
1.10.1280.10 Di-copper center containing domain from catechol oxidase	a.86.1 Di-copper centre-containing domain	152	23
1.10.1290.10 Alpha trans-inducing (Alpha-TIF)	d.180.1 Conserved core of transcriptional regulatory protein vp16	1	1
1.10.1330.10 Dockerin domain	a.139.1 Type I dockerin domain	42	6
1.10.1450.10 Tetraspanin	a.135.1 Tetraspanin	43	4
1.10.1470.10 YjbJ	a.60.11 Hypothetical protein YjbJ	3	1
1.10.1490.10 C-terminal domain of DFF45/ICAD (DFF-C domain)	a.164.1 C-terminal domain of DFF45/ICAD (DFF-C domain)	2	2
1.10.1520.10 Ribonuclease III domain	a.149.1 RNase III domain-like	80	34
1.10.1540.10 BEACH domain	a.169.1 BEACH domain	6	6
1.10.1620.10 Ribosomal protein L39e	a.137.1 Ribosomal protein L39e	118	58
1.10.1620.20 ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial	a.137.8 Epsilon subunit of mitochondrial F1F0-ATP synthase	17	3
1.10.1740.70	a.239.1 ChaB-like	1	1
1.10.1760.10 Actin-related protein 2/3 complex subunit 3	a.148.1 Arp2/3 complex 21 kDa subunit ARPC3	18	10
1.10.1780.10 Clp, N-terminal domain	a.174.1 Double Clp-N motif	66	22
1.10.1810.10 Anti-Sigma Factor A	a.150.1 Anti-sigma factor AsiA	8	6
1.10.1850.10 Scaffold protein D	a.84.1 Scaffolding protein gpD of bacteriophage procapsid	10	9
1.10.2000.10 Frizzled cysteine-rich domain	a.141.1 Frizzled cysteine-rich domain	34	8
1.10.2010.10 Crustacean CHH/MIH/GIH neurohormone	a.163.1 Crustacean CHH/MIH/GIH neurohormone	1	1
1.10.2080.10 Insect odorant-binding protein A10/Ejaculatory bulb-specific protein 3	a.118.21 Chemosensory protein Csp2	9	7
1.10.2090.10 Orange carotenoid-binding protein, N-terminal domain	a.175.1 Orange carotenoid protein, N-terminal domain	22	2
1.10.3030.10 Gametocyte protein Pfg27	a.185.1 Gametocyte protein Pfg27	1	1
1.10.3070.10 EhaM-like	a.200.1 Hypothetical protein MTH393	2	2
1.10.3080.10 Clc chloride channel	f.20.1 Clc chloride channel	94	44
1.10.3180.10 DNA-binding domain of EIN3-like	a.140.5 DNA-binding domain of EIN3-like	3	1
1.10.3200.10 AF0941-like	a.253.1 AF0941-like	2	2
1.10.3230.10 YqbG-like	a.229.1 Hypothetical protein YqbG	2	1
1.10.3260.10 DNA ligase, ATP-dependent, N-terminal domain	a.235.1 ATP-dependent DNA ligase DNA-binding domain	15	1
1.10.3290.10 Fido-like domain	a.265.1 Fic-like	111	3
1.10.3300.10 Jann2411-like domain	d.380.1 Jann2411-like	2	1
1.10.3330.10 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	a.288.1 UraD-Like	26	20
1.10.3340.10 SMc04008-like	a.293.1 SMc04008-like	4	2
1.10.3350.10 HP0242-like domain	a.292.1 HP0242-like	8	2
1.10.3370.10 SecY subunit domain	f.41.1 Preprotein translocase SecY subunit	8	2
1.10.3390.10 YejL-like	a.284.1 YejL-like	13	13
1.10.3430.10 Ammonium transporter AmtB like domains	f.44.1 Ammonium transporter	67	15
1.10.3440.10 Sama2622-like	a.286.1 Sama2622-like	1	1
1.10.3450.30	a.246.3 FLJ32549 domain-like	1	1
1.10.3460.10 Chlorophyll a/b binding protein domain	f.43.1 Chlorophyll a-b binding protein	24	10
1.10.3470.10 ABC transporter involved in vitamin B12 uptake, BtuC	f.22.1 ABC transporter involved in vitamin B12 uptake, BtuC	20	2
1.10.3510.10 NMB0513-like	d.363.1 NMB0513-like	2	1
1.10.3520.10 Glycolipid transfer protein	a.224.1 Glycolipid transfer protein, GLTP	78	7
1.10.3680.10 TerB-like	a.287.1 TerB-like	7	3
1.10.3700.10 AGR C 984p-like	a.295.1 AGR C 984p-like	2	2
1.10.3720.10 MetI-like	f.58.1 MetI-like	60	12
1.10.3730.20	f.39.1 Multidrug resistance efflux transporter EmrE	8	8
1.10.3750.10 YhaI-like	a.219.1 Hypothetical protein YhaI	3	3
1.10.3760.10 PgpA-like	a.195.1 YutG-like	9	9
1.10.3790.10 NinB	d.262.1 NinB	2	2
1.10.3860.10 Sodium:dicarboxylate symporter	f.49.1 Proton glutamate symport protein	66	9
1.10.3880.10 Fe(II) trafficking protein YggX	d.279.1 YggX-like	4	2
1.10.3890.10 HflD-like	a.198.1 YcfC-like	2	2
1.10.3910.10 SP0561-like	a.248.1 SP0561-like	3	1
1.10.3920.10 PA2201 C-terminal domain-like	a.254.1 PA2201 C-terminal domain-like	3	3
1.10.3960.10 MG354-like	a.225.1 Hypothetical protein MG354	1	1
1.10.4080.10 ADP-ribosylation/Crystallin J1	a.209.1 ADP-ribosylglycohydrolase	22	1
1.10.4090.10 Viral capsid, core domain supefamily, Hepatitis B virus	a.62.1 Hepatitis B viral capsid (hbcag)	42	4
1.10.4110.10 Salmonella invasion protein A, C-terminal actin-binding domain	a.196.1 Invasion protein A (SipA) , C-terminal actin binding domain	1	1
1.10.4120.10 SopE-like, GEF domain	a.168.1 SopE-like GEF domain	7	6
1.10.4150.10 SipA N-terminal domain-like	a.257.1 SipA N-terminal domain-like	2	2
1.20.5.100 Cytochrome c1, transmembrane anchor, C-terminal	f.23.11 Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor	212	35
1.20.5.160 Bacterial aa3 type cytochrome c oxidase subunit IV	f.23.8 Bacterial aa3 type cytochrome c oxidase subunit IV	5	5
1.20.5.210 Cytochrome b-c1 complex subunit 8	f.23.13 Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	66	35
1.20.5.260 Cytochrome b-c1 complex subunit 9	f.23.14 Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	64	34
1.20.5.480 Single helix bin	f.23.22 Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor	2	2
1.20.5.620 F1F0 ATP synthase subunit B, membrane domain	f.23.21 F1F0 ATP synthase subunit B, membrane domain	8	1
1.20.5.820 Preprotein translocase SecE subunit	f.23.28 Preprotein translocase SecE subunit	10	5
1.20.10.10 Heat-stable enterotoxin B	g.2.1 Heat-stable enterotoxin B	1	1
1.20.20.10 F1F0 ATP synthase subunit C	f.17.1 F1F0 ATP synthase subunit C	376	17
1.20.58.80 Phosphotransferase system, lactose/cellobiose-type IIA subunit	a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac	14	6
1.20.58.110 Ribosomal protein S20	a.7.6 Ribosomal protein S20	327	71
1.20.58.120 BAG domain	a.7.7 BAG domain	71	8
1.20.58.250 DNA polymerase III-theta	a.237.1 DNA polymerase III theta subunit-like	7	6
1.20.58.300 FlgN-like	a.47.5 FlgN-like	3	1
1.20.58.310 Polyphosphate kinase N-terminal domain	a.7.15 PPK N-terminal domain-like	5	6
1.20.58.390 Neurotransmitter-gated ion-channel transmembrane domain	f.36.1 Neurotransmitter-gated ion-channel transmembrane pore	582	5
1.20.58.420 AHSP	a.7.11 Alpha-hemoglobin stabilizing protein AHSP	33	7
1.20.58.430 Type IV secretion system, VirB5-domain	a.8.7 Typo IV secretion system protein TraC	1	1
1.20.58.510	d.362.1 BLRF2-like	6	6
1.20.58.590	a.47.6 MukF C-terminal domain-like	7	2
1.20.58.760	a.269.1 FtsH protease domain-like	35	14
1.20.58.880	f.53.1 ATP synthase D chain-like	2	2
1.20.58.900	a.256.1 RUN domain-like	9	2
1.20.58.990	a.30.7 BAS1536-like	3	3
1.20.58.2190	d.314.1 PUG domain-like	30	3
1.20.59.20	d.229.1 MesJ substrate recognition domain-like	11	11
1.20.80.10	a.11.2 Second domain of FERM	136	52
1.20.81.10 RAP domain	a.13.1 RAP domain-like	13	7
1.20.90.10 Phospholipase A2 domain	a.133.1 Phospholipase A2, PLA2	505	294
1.20.91.20 Anaphylotoxins (complement system)	a.50.1 Anaphylotoxins (complement system)	42	3
1.20.120.10 Cytochrome c/b562	a.24.3 Cytochromes	244	37
1.20.120.20 Apolipoprotein	a.24.1 Apolipoprotein	21	12
1.20.120.30 Aspartate receptor, ligand-binding domain	a.24.2 Aspartate receptor, ligand-binding domain	25	11
1.20.120.50 Hemerythrin-like	a.24.4 Hemerythrin-like	50	37
1.20.120.70 Tobacco mosaic virus-like, coat protein	a.24.5 TMV-like viral coat proteins	43	7
1.20.120.150 FKBP12-rapamycin binding domain	a.24.7 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)	15	8
1.20.120.160 HPT domain	a.24.10 Histidine-containing phosphotransfer domain, HPT domain	53	37
1.20.120.220 ATP synthase, F0 complex, subunit A	f.18.1 F1F0 ATP synthase subunit A	1	1
1.20.120.240 Lipoprotein, type 6	a.24.12 Outer surface protein C (OspC)	21	9
1.20.120.260 Virulence factor YopE uncharacterised domain	a.24.11 Bacterial GAP domain	8	7
1.20.120.290	a.24.18 Oxygen-evolving enhancer protein 3,	10	1
1.20.120.310 ERV/ALR sulfhydryl oxidase domain	a.24.15 FAD-dependent thiol oxidase	42	10
1.20.120.320 Group V grass pollen allergen	a.24.17 Group V grass pollen allergen	17	15
1.20.120.360 Axin interactor, dorsalization-associated protein, N-terminal domain	a.24.24 Domain from hypothetical 2610208m17rik protein	1	1
1.20.120.400 Nickel-containing superoxide dismutase	a.24.22 Nickel-containing superoxide dismutase, NiSOD	84	72
1.20.120.430 tRNA modification GTPase MnmE domain 2	a.24.25 TrmE connector domain	7	2
1.20.120.440 YppE-like	a.24.26 YppE-like	5	5
1.20.120.450 dinb family like domain	a.213.1 DinB/YfiT-like putative metalloenzymes	48	16
1.20.120.470 Acyl-CoA dehydrogenase, C-terminal domain	a.48.5 PG0775 C-terminal domain-like	2	2
1.20.120.490 Hypothetical protein TM1646-like domain	a.24.29 TM1646-like	2	1
1.20.120.530 GntR ligand-binding domain-like	a.78.1 GntR ligand-binding domain-like	28	9
1.20.120.550 Membrane associated eicosanoid/glutathione metabolism-like domain	f.56.1 MAPEG domain-like	49	27
1.20.120.570 YkyA-like	a.24.27 MW0975(SA0943)-like	1	1
1.20.120.590 EF2947-like	a.244.1 EF2947-like	1	1
1.20.120.630 RecG, N-terminal domain	a.24.21 RecG, N-terminal domain	1	1
1.20.120.650 Colicin D	a.24.20 Colicin D immunity protein	3	3
1.20.120.680	a.191.1 Methenyltetrahydrofolate cyclohydrolase-like	6	2
1.20.120.690	a.220.1 Hypothetical protein At3g22680	3	2
1.20.120.740	a.199.1 YgfB-like	3	1
1.20.120.770	a.47.4 CAPPD, an extracellular domain of amyloid beta A4 protein	23	2
1.20.120.780	a.159.3 B-form DNA mimic Ocr	1	1
1.20.120.790	d.271.1 HSP90 C-terminal domain	24	8
1.20.120.820	d.293.1 Phosphoprotein M1, C-terminal domain	4	1
1.20.120.1110	a.277.1 TAFH domain-like	4	3
1.20.120.1120	d.370.1 BTG domain-like	10	6
1.20.120.1130	a.24.28 VPS28 C-terminal domain-like	12	10
1.20.140.20 Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain	a.29.5 alpha-ketoacid dehydrogenase kinase, N-terminal domain	61	13
1.20.140.30 MOB kinase activator	a.29.7 Mob1/phocein	29	2
1.20.140.40 Invertase/pectin methylesterase inhibitor family protein	a.29.6 Plant invertase/pectin methylesterase inhibitor	25	18
1.20.142.10 Poly(ADP-ribose) polymerase, regulatory domain	a.41.1 Domain of poly(ADP-ribose) polymerase	96	19
1.20.150.10 Fertilization protein	a.19.1 Fertilization protein	11	11
1.20.190.10 Pesticidal crystal protein, N-terminal domain	f.1.3 delta-Endotoxin (insectocide), N-terminal domain	29	4
1.20.190.20 14-3-3 domain	a.118.7 14-3-3 protein	213	35
1.20.190.30	a.47.3 Cag-Z	1	1
1.20.200.20 She2 domain	a.232.1 RNA-binding protein She2p	14	2
1.20.210.10 Cytochrome c oxidase-like, subunit I domain	f.24.1 Cytochrome c oxidase subunit I-like	140	42
1.20.225.10 Bacteriocin AS-48	a.64.2 Bacteriocin AS-48	15	11
1.20.272.30	d.259.1 Hypothetical protein HI1480	2	2
1.20.840.10 Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal	a.89.1 Methyl-coenzyme M reductase alpha and beta chain C-terminal domain	90	28
1.20.860.20 Photosystem I PsaK, reaction centre	f.30.1 Photosystem I reaction center subunit X, PsaK	2	1
1.20.890.10 cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain	a.31.1 Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit	65	22
1.20.900.10 Dbl homology (DH) domain	a.87.1 DBL homology domain (DH-domain)	91	35
1.20.910.10 Heme oxygenase-like	a.132.1 Heme oxygenase-like	258	155
1.20.930.20 Adaptor protein Cbl, N-terminal domain	a.48.1 N-terminal domain of cbl (N-cbl)	60	14
1.20.930.40 Transferrin receptor-like, dimerisation domain	a.48.2 Transferrin receptor-like dimerisation domain	88	30
1.20.940.10 Functional domain of the splicing factor Prp18	a.72.1 Functional domain of the splicing factor Prp18	6	2
1.20.960.10 Mitochondrial outer membrane translocase complex, subunit Tom20 domain	a.23.4 Mitochondrial import receptor subunit Tom20	29	1
1.20.960.30	a.221.1 Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain	20	4
1.20.970.20 Glycogen synthesis protein GlgS	a.7.10 Glycogen synthesis protein GlgS	1	1
1.20.1000.10 Guanylate-binding protein, C-terminal domain	a.114.1 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	2	2
1.20.1020.10 TAZ domain	g.53.1 TAZ domain	17	5
1.20.1070.10 Rhopdopsin 7-helix transmembrane proteins	f.13.1 Family A G protein-coupled receptor-like	514	106
1.20.1080.10 Glycerol uptake facilitator protein.	f.19.1 Aquaporin-like	192	23
1.20.1110.10 Calcium-transporting ATPase, transmembrane domain	f.33.1 Calcium ATPase, transmembrane domain M	121	22
1.20.1130.10 Photosystem I PsaA/PsaB	f.29.1 Photosystem I subunits PsaA/PsaB	28	2
1.20.1150.12 Endoplasmic reticulum resident protein 29, C-terminal domain	a.71.1 ERP29 C domain-like	13	10
1.20.1160.11 Paired amphipathic helix	a.59.1 PAH2 domain	12	6
1.20.1200.10 Cobalamin adenosyltransferase-like	a.25.2 Cobalamin adenosyltransferase-like	49	5
1.20.1240.10 Photosystem I PsaL, reaction centre subunit XI	f.31.1 Photosystem I reaction center subunit XI, PsaL	14	1
1.20.1270.60 Arfaptin homology (AH) domain/BAR domain	a.238.1 BAR/IMD domain-like	134	25
1.20.1270.90 AF1782-like	a.8.11 AF1782-like	41	2
1.20.1270.110 Uncharacterised protein family UPF0058	a.8.10 Vng1086c-like	2	1
1.20.1270.140 AvrPto	a.8.8 Avirulence protein AvrPto	2	2
1.20.1280.40 HHA	a.23.5 Hemolysin expression modulating protein HHA	7	1
1.20.1290.30	a.247.1 YoaC-like	2	1
1.20.1300.10 Fumarate reductase/succinate dehydrogenase, transmembrane subunit	f.21.2 Fumarate reductase respiratory complex transmembrane subunits	218	38
1.20.1380.10 Replication modulator SeqA, C-terminal DNA-binding domain	d.228.1 Replication modulator SeqA, C-terminal DNA-binding domain	11	5
1.20.1390.10 PWI domain	a.188.1 PWI domain	7	1
1.20.1400.10 Attractin	g.63.1 Mollusk pheromone	2	1
1.20.1410.10 I/LWEQ domain	a.216.1 I/LWEQ domain	10	10
1.20.1420.10 Talin, central domain	a.215.1 A middle domain of Talin 1	19	4
1.20.1440.20 LemA-like domain	a.29.9 LemA-like	1	1
1.20.1440.40 YqcC-like	a.29.17 YqcC-like	1	1
1.20.1440.60 23S rRNA-intervening sequence	a.29.16 IVS-encoded protein-like	10	10
1.20.1440.70 PA2201 N-terminal domain-like	a.29.11 PA2201 N-terminal domain-like	3	3
1.20.1440.230	a.29.12 Nqo1C-terminal domain-like	15	4
1.20.1480.20 MAST3 pre-PK domain-like	a.29.10 MAST3 pre-PK domain-like	2	1
1.20.1500.10 YheA/YmcA-like	a.281.1 YheA/YmcA-like	12	12
1.20.1510.10 Cation efflux protein transmembrane domain	f.59.1 Cation efflux protein transmembrane domain-like	6	2
1.20.1540.10 Rhomboid-like	f.51.1 Rhomboid-like	32	8
1.20.1550.10 DsbB-like	a.29.15 DsbB-like	11	1
1.20.1600.10 Outer membrane efflux proteins (OEP)	f.5.1 Outer membrane efflux proteins (OEP)	53	8
1.20.1710.10 IpaD-like	a.250.1 IpaD-like	36	11
1.25.10.20 Vitellinogen, superhelical	a.118.4 Lipovitellin-phosvitin complex, superhelical domain	1	1
1.25.10.30 IP3 receptor type 1 binding core, RIH domain	a.118.22 IP3 receptor type 1 binding core, domain 2	7	1
1.25.20.10 Bacterial muramidases	a.118.5 Bacterial muramidases	3	3
1.25.40.40 Cytochrome c oxidase, subunit Va/VI	a.118.11 Cytochrome c oxidase subunit E	62	28
1.25.40.90	a.118.9 ENTH/VHS domain	131	45
1.25.40.120 Protein prenylyltransferase	a.118.6 Protein prenylyltransferase	153	102
1.25.40.190 Actin-related protein 2/3 complex subunit 5	a.118.13 Arp2/3 complex 16 kDa subunit ARPC5	20	10
1.25.40.200 Ran-GTPase activating protein 1, C-terminal domain	a.118.12 Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain	16	11
1.25.40.210 Telomere repeat-binding factor, dimerisation domain	a.146.1 Telomeric repeat binding factor (TRF) dimerisation domain	17	10
1.25.40.240 Ku, C-terminal domain	a.118.19 C-terminal domain of Ku80	4	2
1.25.40.310	a.118.15 Aconitase B, N-terminal domain	2	2
1.25.40.330	a.192.1 N-terminal domain of adenylylcyclase associated protein, CAP	6	4
1.25.40.340	a.208.1 DhaL-like	12	6
1.25.40.350	a.118.20 Hypothetical protein ST1625	2	1
1.25.40.380	a.255.1 Rv1873-like	2	1
1.25.40.500	d.379.1 Taf5 N-terminal domain-like	14	14
1.25.40.1020	a.137.5 Moesin tail domain	4	2
1.25.60.10 MgtE N-terminal domain-like	a.118.26 MgtE N-terminal domain-like	11	5
1.50.10.100 Chondroitin AC/alginate lyase	a.102.3 Chondroitin AC/alginate lyase	96	43
1.50.40.10 Mitochondrial carrier domain	f.42.1 Mitochondrial carrier	10	1
2.10.10.20 Carbohydrate-binding module superfamily 5/12	b.72.2 Carbohydrate binding domain	60	30
2.10.150.10 Urease, beta subunit	b.85.3 Urease, beta-subunit	70	35
2.10.160.10 Vascular endothelial growth factor, heparin-binding domain	g.25.1 Heparin-binding domain from vascular endothelial growth factor	5	3
2.10.230.10 Heat shock protein DnaJ, cysteine-rich domain	g.54.1 DnaJ/Hsp40 cysteine-rich domain	3	2
2.10.250.10 Calreticulin/calnexin, P domain	b.104.1 P-domain of calnexin/calreticulin	4	4
2.10.290.10 YfgJ-like	g.41.18 YfgJ-like	2	1
2.20.25.80 WRKY domain	g.79.1 WRKY DNA-binding domain	3	1
2.20.28.20 Methionyl-tRNA synthetase, Zn-domain	g.41.1 Methionyl-tRNA synthetase (MetRS), Zn-domain	11	10
2.20.28.30 RNA polymerase ii, chain L	g.41.9 RNA polymerase subunits	126	31
2.20.28.130	d.76.2 BRK domain-like	4	5
2.30.18.10 Transcription factor IIA (TFIIA), beta-barrel domain	b.56.1 Transcription factor IIA (TFIIA), beta-barrel domain	11	7
2.30.22.10 Head domain of nucleotide exchange factor GrpE	b.73.1 Head domain of nucleotide exchange factor GrpE	4	2
2.30.24.10 CAT RNA-binding domain	b.35.2 SacY-like RNA-binding domain	5	4
2.30.30.20 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain	g.41.7 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	139	100
2.30.30.110	b.34.6 Cell growth inhibitor/plasmid maintenance toxic component	109	24
2.30.30.130 Transposase, Mu, C-terminal	b.48.1 mu transposase, C-terminal domain	5	3
2.30.30.180 Ribosome maturation factor RimP, C-terminal domain	b.38.2 YhbC-like, C-terminal domain	1	1
2.30.30.210 Ribonuclease P/MRP, subunit p29	b.137.1 Rof/RNase P subunit-like	9	7
2.30.30.220 SspB-like	b.136.1 SspB-like	33	28
2.30.30.230 Fumarylacetoacetase, N-terminal domain	b.34.8 Fumarylacetoacetate hydrolase, FAH, N-terminal domain	14	10
2.30.30.390 Hemimethylated DNA-binding domain	b.34.17 YccV-like	1	1
2.30.30.430	b.34.16 Kinase-associated protein B-like	2	2
2.30.30.490	b.34.12 BAH domain	40	4
2.30.30.520	b.38.3 GatD N-terminal domain-like	4	4
2.30.30.680	d.9.2 PhtA domain-like	4	3
2.30.30.690	b.38.5 TrmB C-terminal domain-like	2	1
2.30.30.870	b.38.4 Dom34/Pelota N-terminal domain-like	16	4
2.30.30.920	b.34.19 Mib/herc2 domain-like	2	1
2.30.32.30 CBM10	g.29.1 Type X cellulose binding domain, CBDX	3	2
2.30.60.10 Cyanovirin-N	b.89.1 Cyanovirin-N	52	16
2.30.110.20 Hcp1-like	b.157.1 Hcp1-like	25	3
2.30.130.50	g.3.19 Bubble protein	1	1
2.30.180.10 FAS1 domain	b.118.1 FAS1 domain	10	3
2.30.240.10 At5g01610-like	b.162.1 At5g01610-like	1	1
2.30.270.30	b.55.2 PA2021-like	1	1
2.30.290.10 BH3618-like	b.158.1 BH3618-like	6	2
2.30.320.10 YwqG-like	d.251.1 Hypothetical protein YwqG	1	1
2.30.330.10 SpoA-like	b.139.1 Surface presentation of antigens (SPOA)	21	8
2.40.10.250 Replicase NSP9	b.140.1 Replicase NSP9	16	3
2.40.15.10 TCL1/MTCP1	b.63.1 Oncogene products	6	6
2.40.30.30 Riboflavin kinase-like	b.43.5 Riboflavin kinase-like	61	31
2.40.30.40 Peptidase M42, domain 2	b.49.3 Aminopeptidase/glucanase lid domain	95	32
2.40.30.80 YkvR-like	b.45.3 YkvR-like	1	1
2.40.30.90 Bacterial fluorinating enzyme like	b.141.1 Bacterial fluorinating enzyme, C-terminal domain	77	45
2.40.30.110 Aminomethyltransferase beta-barrel domains	b.44.2 Aminomethyltransferase beta-barrel domain	38	12
2.40.33.10 PK beta-barrel domain-like	b.58.1 PK beta-barrel domain-like	280	105
2.40.33.40 Phosphotransferase system, glucitol/sorbitol-specific IIA component	b.161.1 PTSIIA/GutA-like	2	2
2.40.50.60	g.26.1 Antifungal protein (AGAFP)	5	1
2.40.50.90	b.40.1 Staphylococcal nuclease	339	69
2.40.50.200 Bacterial OB-fold	b.40.10 Hypothetical protein YgiW	1	1
2.40.50.220 EutN/Ccml	b.40.15 EutN/CcmL-like	88	33
2.40.50.240 NifT/FixU-like	b.173.1 NifT/FixU-like	1	1
2.40.50.280	d.368.1 YonK-like	4	4
2.40.50.480	b.40.13 BC4932-like	4	2
2.40.100.10 Cyclophilin-like	b.62.1 Cyclophilin-like	417	179
2.40.128.30 Avidin-like	b.61.1 Avidin/streptavidin	603	299
2.40.128.80 Cathepsin C, exclusion domain	b.61.5 Dipeptidyl peptidase I (cathepsin C), exclusion domain	17	4
2.40.128.110 Lipid/polyisoprenoid-binding, YceI-like	b.61.6 YceI-like	21	5
2.40.128.120 Quinohemoprotein amine dehydrogenase alpha subunit, domain 2	b.61.4 Quinohemoprotein amine dehydrogenase A chain, domain 3	4	4
2.40.128.130 Autotransporter beta-domain	f.4.5 Autotransporter	15	2
2.40.128.200	b.61.8 YdhA-like	16	1
2.40.150.20 Ribosomal protein L14	b.39.1 Ribosomal protein L14	384	91
2.40.155.10 Green fluorescent protein	d.22.1 GFP-like	1366	90
2.40.160.20	f.4.1 OMPA-like	52	15
2.40.230.10 Phospholipase A1	f.4.2 Outer membrane phospholipase A (OMPLA)	11	9
2.40.230.20 Nucleoside-specific channel-forming protein, Tsx-like	f.4.6 Tsx-like channel	6	6
2.40.240.60	d.242.1 Obg GTP-binding protein C-terminal domain	1	1
2.40.250.10 Core binding factor, beta subunit	b.54.1 Core binding factor beta, CBF	36	10
2.40.260.10 Sortase	b.100.1 Sortase	108	18
2.40.280.10	b.111.1 Small protein B (SmpB)	10	12
2.40.300.10 Head decoration protein D	b.85.2 Head decoration protein D (gpD, major capsid protein D)	24	18
2.40.310.10 beta-Barrel protease inhibitors	b.61.2 beta-Barrel protease inhibitors	9	11
2.40.330.10 DNA-binding pseudobarrel domain	b.142.1 DNA-binding pseudobarrel domain	15	4
2.40.340.10 MoeA, C-terminal, domain IV	b.85.6 MoeA C-terminal domain-like	58	40
2.40.350.10 SO1590-like	b.159.2 SO1590-like	4	4
2.40.360.10 YmcC-like	b.177.1 YmcC-like	2	2
2.40.380.10 FomD-like	b.175.1 FomD-like	5	2
2.40.400.10 Acetoacetate decarboxylase-like	d.347.1 Acetoacetate decarboxylase-like	36	8
2.40.440.10 L,D-transpeptidase catalytic domain-like	b.160.1 L,D-transpeptidase catalytic domain-like	95	3
2.40.480.10 Allene oxide cyclase-like	b.159.1 Allene oxide cyclase-like	61	19
2.40.500.20	d.44.1 Fe,Mn superoxide dismutase (SOD), C-terminal domain	301	222
2.50.10.10 Bacteriochlorophyll A	b.75.1 Bacteriochlorophyll A protein	13	6
2.50.20.10 Lipoprotein localisation LolA/LolB/LppX	b.125.1 Prokaryotic lipoproteins and lipoprotein localization factors	44	6
2.60.9.10 Neurohypophysial hormone domain	b.9.1 Neurophysin II	29	11
2.60.30.10 Methylamine/Aralkylamine dehydrogenase light chain	g.21.1 Methylamine dehydrogenase, L chain	146	32
2.60.40.20 Alpha-amylase inhibitor	b.5.1 alpha-Amylase inhibitor tendamistat	7	6
2.60.40.50 TRAP-like	b.82.5 TRAP-like	478	184
2.60.40.180 Transthyretin/hydroxyisourate hydrolase domain	b.3.4 Transthyretin (synonym: prealbumin)	700	224
2.60.40.200 Superoxide dismutase, copper/zinc binding domain	b.1.8 Cu,Zn superoxide dismutase-like	604	237
2.60.40.230 Neocarzinostatin-like	b.1.7 Actinoxanthin-like	27	15
2.60.40.380 Purple acid phosphatase-like, N-terminal	b.1.12 Purple acid phosphatase, N-terminal domain	38	20
2.60.40.690 Alpha-macroglobulin, receptor-binding domain	b.2.4 Alpha-macroglobulin receptor domain	63	5
2.60.40.700 Diphtheria toxin, receptor-binding domain	b.2.1 Diphtheria toxin, C-terminal domain	18	9
2.60.40.760 Expansin, cellulose-binding-like domain	b.7.3 PHL pollen allergen	29	5
2.60.40.830 Cytochrome f large domain	b.2.6 Cytochrome f, large domain	38	21
2.60.40.1120 Carboxypeptidase-like, regulatory domain	b.3.2 Carboxypeptidase regulatory domain-like	46	4
2.60.40.1240	b.1.19 Antigen MPT63/MPB63 (immunoprotective extracellular protein)	7	1
2.60.40.1250 Thiol:disulfide interchange protein DsbD, N-terminal domain	b.1.17 Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)	13	6
2.60.40.1260 Lamin Tail domain	b.1.16 Lamin A/C globular tail domain	17	3
2.60.40.1320 SRS domain	b.6.2 Major surface antigen p30, SAG1	14	8
2.60.40.1470 ApaG domain	b.1.23 ApaG-like	10	8
2.60.40.1490 Histone chaperone ASF1-like	b.1.22 ASF1-like	46	21
2.60.40.1550 SARS coronavirus X4	b.1.24 Accessory protein X4 (ORF8, ORF7a)	2	1
2.60.40.1600 Smr-associated-like	b.7.5 Smr-associated domain-like	1	1
2.60.40.1700 Protein-arginine deiminase, central domain	b.2.9 Peptidylarginine deiminase Pad4, middle domain	35	7
2.60.40.1730 tricorn interacting facor f3 domain	b.98.1 Leukotriene A4 hydrolase N-terminal domain	204	15
2.60.40.1790	b.1.21 Fungal immunomodulatory protein, FIP	5	2
2.60.40.1810	d.255.1 Tombusvirus P19 core protein, VP19	13	3
2.60.40.1820	b.1.25 LEA14-like	2	1
2.60.40.1850	b.1.28 NEAT domain-like	76	10
2.60.40.2020	b.1.26 ICP-like	17	10
2.60.40.2030	b.1.27 CalX-like	39	3
2.60.40.2080	b.154.1 Agglutinin HPA-like	33	2
2.60.40.2770	b.170.1 WSSV envelope protein-like	13	13
2.60.60.20 PLAT/LH2 domain	b.12.1 Lipase/lipooxygenase domain (PLAT/LH2 domain)	100	50
2.60.90.10 Adenovirus pIV-related, attachment domain	b.21.1 Virus attachment protein globular domain	180	62
2.60.110.10 Thaumatin	b.25.1 Osmotin, thaumatin-like protein	135	25
2.60.120.40	b.22.1 TNF-like	431	177
2.60.120.280 Regulatory protein AraC	b.82.4 Regulatory protein AraC	10	10
2.60.120.290 Spermadhesin, CUB domain	b.23.1 Spermadhesin, CUB domain	70	12
2.60.120.340 Nucleoplasmin core domain	b.121.3 Nucleoplasmin-like core domain	90	30
2.60.120.390 Olfactory marker	b.94.1 Olfactory marker protein	7	7
2.60.120.400 Calcium-mediated lectin	b.115.1 Calcium-mediated lectin	145	52
2.60.120.460 YjbQ-like	d.273.1 YjbQ-like	22	14
2.60.120.510 Mitogen Ypm	b.135.1 Superantigen (mitogen) Ypm	4	4
2.60.120.680 GOLD domain	b.132.1 Supernatant protein factor (SPF), C-terminal domain	10	6
2.60.130.10 Aromatic compound dioxygenase	b.3.6 Aromatic compound dioxygenase	440	294
2.60.175.10 Capsid protein VP1,Polyomavirus	b.121.6 Group I dsDNA viruses	383	34
2.60.220.10 Polysaccharide lyase family 8-like, C-terminal	b.24.1 Hyaluronate lyase-like, C-terminal domain	66	41
2.60.240.10 Major secreted virus protein	b.27.1 Soluble secreted chemokine inhibitor, VCCI	7	2
2.60.250.10 Baculovirus p35	b.28.1 Baculovirus p35 protein	10	10
2.60.270.20 Cytolysin/lectin	b.97.1 Cytolysin/lectin	121	24
2.60.290.11 TM1070-like	b.123.1 Hypothetical protein TM1070	25	4
2.60.300.12 HesB-like domain	b.124.1 HesB-like domain	17	8
2.60.310.10 Haemocyanin C-terminal domain	b.112.1 C-terminal domain of mollusc hemocyanin	7	5
2.60.320.10 N-utilization substance G protein NusG, insert domain	b.114.1 N-utilization substance G protein NusG, insert domain	17	10
2.60.350.10 Dextranase, N-terminal	b.133.1 Dextranase, N-terminal domain	12	2
2.60.370.10 Ctag/Cox11	b.146.1 Ctag/Cox11	2	2
2.60.390.10 Beta-galactosidase, domain 3	b.149.1 Beta-galactosidase LacA, domain 3	11	2
2.60.410.10 D-Ala-D-Ala carboxypeptidase, C-terminal domain	b.105.1 Penicillin-binding protein associated domain	32	14
2.60.530.10 Major cell-surface adhesin PAc	b.30.6 V-region of surface antigen I/II (SA I/II, PAC)	1	1
2.70.20.20	b.31.1 EV matrix protein	16	5
2.70.40.20 Baculovirus telokin-like protein 20	b.85.5 Tlp20, baculovirus telokin-like protein	1	1
2.70.98.20 Copper amine oxidase, catalytic domain	b.30.2 Amine oxidase catalytic domain	250	117
2.70.170.10 Neurotransmitter-gated ion-channel ligand-binding domain	b.96.1 Nicotinic receptor ligand binding domain-like	1507	50
2.70.180.10 Hypothetical protein YojF	b.128.1 Hypothetical protein YojF	1	1
2.70.210.12 GTP1/OBG domain	b.117.1 Obg GTP-binding protein N-terminal domain	4	3
2.70.220.10 Ganglioside GM2 activator	b.95.1 Ganglioside M2 (gm2) activator	19	16
2.70.240.10 Leukocidin/porin MspA	f.6.1 Leukocidin-like	183	21
2.100.10.10 Pesticidal crystal protein, central domain	b.77.2 delta-Endotoxin (insectocide), middle domain	26	4
2.100.10.20 Vitelline membrane outer layer protein I (VOMI)	b.77.1 Vitelline membrane outer protein-I (VMO-I)	2	2
2.100.10.30 Jacalin-like lectin domain	b.77.3 Mannose-binding lectins	295	93
2.115.10.10 Tachylectin 2	b.67.1 Tachylectin-2	2	1
2.115.10.20 Glycosyl hydrolase domain; family 43	b.67.2 Arabinanase/levansucrase/invertase	430	66
2.120.10.60 Tricorn protease N-terminal domain	b.68.7 Tricorn protease N-terminal domain	24	24
2.120.10.70 Fucose-specific lectin	b.68.8 Fucose-specific lectin	56	4
2.120.10.80 Kelch-type beta propeller	b.68.11 Kelch motif	68	7
2.120.10.90 DNA gyrase/topoisomerase IV, subunit A, C-terminal	b.68.10 GyrA/ParC C-terminal domain-like	11	2
2.120.10.100	b.67.3 Apyrase	8	6
2.130.10.30 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	b.69.5 RCC1/BLIP-II	51	6
2.130.10.80 Galactose oxidase/kelch, beta-propeller	b.69.1 Galactose oxidase, central domain	15	12
2.130.10.110 Clathrin heavy-chain terminal domain	b.69.6 Clathrin heavy-chain terminal domain	25	9
2.130.10.130 Integrin alpha, N-terminal	b.69.8 Integrin alpha N-terminal domain	101	7
2.140.10.10 Quinoprotein alcohol dehydrogenase-like superfamily	b.70.1 Quinoprotein alcohol dehydrogenase-like	48	24
2.140.10.20 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	b.70.2 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	42	42
2.140.10.30	b.70.3 DPP6 N-terminal domain-like	309	159
2.150.10.10 Serralysin-like metalloprotease, C-terminal	b.80.7 beta-Roll	86	20
2.160.10.20 Insect antifreeze protein	b.81.2 An insect antifreeze protein	17	11
2.160.20.10 Single-stranded right-handed beta-helix, Pectin lyase-like	b.80.1 Pectin lyase-like	270	76
2.160.20.50 Insect antifreeze protein	b.80.2 Insect cysteine-rich antifreeze protein	3	3
2.160.20.60 Glutamate synthase, alpha subunit, C-terminal domain	b.80.4 Alpha subunit of glutamate synthase, C-terminal domain	9	15
2.160.20.100	b.80.8 Pentapeptide repeat-like	23	13
2.170.14.10 Phage P22 tailspike-like, N-terminal domain	b.90.1 Head-binding domain of phage P22 tailspike protein	11	6
2.170.16.10 Hedgehog/Intein (Hint) domain	b.86.1 Hedgehog/intein (Hint) domain	53	16
2.170.40.20 Human immunodeficiency virus 1, Gp160, envelope glycoprotein	d.172.1 gp120 core	187	24
2.170.120.12 DNA-directed RNA polymerase, insert domain	d.181.1 Insert subdomain of RNA polymerase alpha subunit	320	73
2.170.130.20 LCCL-like domain	d.209.1 LCCL domain	1	1
2.170.140.10 Chitin binding domain	g.31.1 Invertebrate chitin-binding proteins	1	2
2.170.210.10 DNA double-strand break repair and VJ recombination XRCC4, N-terminal	b.59.1 XRCC4, N-terminal domain	58	4
2.170.260.30	b.34.21 Plus3-like	12	2
3.10.20.10	d.15.7 Immunoglobulin-binding domains	300	68
3.10.20.70 Glutamine synthetase, N-terminal domain	d.15.9 Glutamine synthetase, N-terminal domain	358	126
3.10.20.80 Translation initiation factor 3 (IF-3), N-terminal domain	d.15.8 Translation initiation factor IF3, N-terminal domain	1	1
3.10.20.230 Doublecortin domain	d.15.11 Doublecortin (DC)	20	4
3.10.20.250 YML108W-like	d.263.1 Hypothetical protein Yml108w	1	1
3.10.20.270 TmoB-like	d.15.12 TmoB-like	39	6
3.10.20.330	b.174.1 YopT-like	2	2
3.10.20.350	d.15.14 NSP3A-like	3	2
3.10.20.600	d.15.13 Nqo1 middle domain-like	15	4
3.10.50.10	d.26.3 Chitinase insertion domain	326	154
3.10.50.20 Cloacin immunity protein	d.26.2 Colicin E3 immunity protein	8	7
3.10.110.10 Ubiquitin Conjugating Enzyme	d.20.1 UBC-like	425	125
3.10.120.10 Cytochrome b5-like heme/steroid binding domain	d.120.1 Cytochrome b5-like heme/steroid binding domain	102	57
3.10.130.10 Ribonuclease A-like domain	d.5.1 RNase A-like	586	284
3.10.200.10 Alpha carbonic anhydrase	b.74.1 Carbonic anhydrase	908	276
3.10.250.10 SRCR-like domain	d.170.1 SRCR-like	21	5
3.10.260.10 Transcription regulator HTH, APSES-type DNA-binding domain	d.34.1 DNA-binding domain of Mlu1-box binding protein MBP1	5	3
3.10.280.10 Mitochondrial glycoprotein	d.25.1 Mitochondrial glycoprotein MAM33-like	14	9
3.10.290.30 MM3350-like	d.343.1 MM3350-like	2	2
3.10.330.10	d.31.1 Cdc48 domain 2-like	140	22
3.10.350.10 LysM domain	d.7.1 LysM domain	39	3
3.10.380.10 Colicin E3-like ribonuclease domain	b.101.1 Ribonuclease domain of colicin E3	7	5
3.10.390.10 SAND domain-like	d.217.1 SAND domain-like	9	6
3.10.420.10 SecB-like	d.33.1 SecB-like	49	21
3.10.430.100 Ribosomal protein L9, C-terminal domain	d.99.1 Ribosomal protein L9 C-domain	192	39
3.10.450.20 Bacteriophage PBS2, uracil-glycosylase inhibitor	d.17.5 Uracil-DNA glycosylase inhibitor protein	41	33
3.10.450.70 Disulphide bond isomerase, DsbC/G, N-terminal	d.17.3 DsbC/DsbG N-terminal domain-like	34	24
3.10.450.140 dsDNA mimic, putative	d.17.7 Putative dsDNA mimic	1	1
3.10.450.180	d.200.1 Integrin beta tail domain	12	4
3.10.460.10 VSV matrix protein	d.213.1 VSV matrix protein	3	1
3.10.470.10 Chromosomal protein MC1	d.247.1 Chromosomal protein MC1	4	1
3.10.490.10 Gamma-glutamyl cyclotransferase-like	d.269.1 Gamma-glutamyl cyclotransferase-like	27	3
3.10.510.10 NE1680-like	d.375.1 NE1680-like	1	1
3.10.530.10 CPE0013-like	d.349.1 CPE0013-like	1	1
3.10.660.10 DPH Zinc finger	g.41.17 CSL zinc finger	13	3
3.15.10.20	d.83.2 Activator of Hsp90 ATPase, Aha1	7	5
3.20.16.10 Herpesvirus/Caudovirus protease domain	b.57.1 Herpes virus serine proteinase, assemblin	59	45
3.20.19.10 Aconitase, domain 4	c.8.2 LeuD/IlvD-like	46	25
3.20.20.10 Alanine racemase	c.1.6 PLP-binding barrel	280	59
3.20.20.20 Dihydropteroate synthase-like	c.1.21 Dihydropteroate synthetase-like	209	36
3.20.20.30 Luciferase-like domain	c.1.16 Bacterial luciferase-like	67	24
3.20.20.40 1, 4-beta cellobiohydrolase	c.6.1 Glycosyl hydrolases family 6, cellulases	63	32
3.20.20.100 NADP-dependent oxidoreductase domain	c.1.7 NAD(P)-linked oxidoreductase	559	149
3.20.20.105 Queuine tRNA-ribosyltransferase-like	c.1.20 tRNA-guanine transglycosylase	139	48
3.20.20.110 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	c.1.14 RuBisCo, C-terminal domain	424	205
3.20.20.120 Enolase-like C-terminal domain	c.1.11 Enolase C-terminal domain-like	1323	198
3.20.20.190 Phosphatidylinositol (PI) phosphodiesterase	c.1.18 PLC-like phosphodiesterases	150	46
3.20.20.220	c.1.23 FAD-linked oxidoreductase	55	11
3.20.20.330 Homocysteine-binding-like domain	c.1.26 Homocysteine S-methyltransferase	33	24
3.20.20.380 Copper homeostasis (CutC) domain	c.1.30 CutC-like	22	6
3.20.20.400 GlpP-like	c.1.29 GlpP-like	12	4
3.20.20.410 Protein of unknown function UPF0759	c.1.32 TM1631-like	4	2
3.20.20.450 EAL domain	c.1.33 EAL domain-like	88	2
3.20.20.460 Monomethylamine methyltransferase MtmB	c.1.25 Monomethylamine methyltransferase MtmB	6	5
3.20.80.10 Regulatory factor, effector binding domain	d.60.1 Probable bacterial effector-binding domain	52	16
3.20.120.10 Hydrophobin	b.138.1 Hydrophobin II, HfbII	26	14
3.20.130.10 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain	c.8.9 FumA C-terminal domain-like	5	1
3.20.190.10 MutM-like, N-terminal	b.113.1 N-terminal domain of MutM-like DNA repair proteins	111	33
3.30.30.10 Knottin, scorpion toxin-like	g.3.7 Scorpion toxin-like	158	118
3.30.30.60 D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain	d.230.4 D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain	25	1
3.30.40.30 YqaI domain	d.372.1 YqaI-like	2	2
3.30.40.120	g.41.15 NOB1 zinc finger-like	1	1
3.30.56.30 Signal recognition particle, SRP19-like subunit	d.201.1 SRP19	24	10
3.30.56.60 XkdW-like	d.186.2 XkdW-like	1	1
3.30.62.10 Nef Regulatory Factor	d.102.1 Regulatory factor Nef	31	6
3.30.66.10 DNA topoisomerase I domain	d.121.1 DNA topoisomerase I domain	6	1
3.30.70.60	d.58.14 Ribosomal protein S6	364	83
3.30.70.120	d.58.5 GlnB-like	435	97
3.30.70.140 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain	d.58.2 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain	138	100
3.30.70.141 Nucleoside diphosphate kinase-like domain	d.58.6 Nucleoside diphosphate kinase, NDK	619	207
3.30.70.150 RuBisCO large subunit, N-terminal domain	d.58.9 RuBisCO, large subunit, small (N-terminal) domain	424	205
3.30.70.250 Malonyl-CoA ACP transacylase, ACP-binding	d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase	66	2
3.30.70.380 Ferrodoxin-fold anticodon-binding domain	d.58.13 Anticodon-binding domain of PheRS	31	9
3.30.70.400 CheY-binding domain of CheA	d.58.24 CheY-binding domain of CheA	14	14
3.30.70.420	d.58.20 NAD-binding domain of HMG-CoA reductase	112	46
3.30.70.440 Killer toxin KP6 alpha-subunit	d.58.25 Killer toxin KP6 alpha-subunit	3	1
3.30.70.560 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK	d.58.30 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK	100	23
3.30.70.600 Ribosomal protein S10 domain	d.58.15 Ribosomal protein S10	426	69
3.30.70.640 Molybdopterin cofactor biosynthesis C (MoaC) domain	d.58.21 Molybdenum cofactor biosynthesis protein C, MoaC	56	2
3.30.70.650 Translation repressor RegA	d.58.27 Translational regulator protein regA	2	2
3.30.70.680 TRADD, N-terminal domain	d.58.22 TRADD, N-terminal domain	2	2
3.30.70.790 UreE, C-terminal domain	d.58.38 Urease metallochaperone UreE, C-terminal domain	38	12
3.30.70.890 GHMP kinase, C-terminal domain	d.58.26 GHMP Kinase, C-terminal domain	156	44
3.30.70.940 NusG, N-terminal domain	d.58.42 N-utilization substance G protein NusG, N-terminal domain	30	11
3.30.70.960 SEA domain	d.58.41 SEA domain	3	1
3.30.70.970 RraB-like	d.58.47 Hypothetical protein VC0424	1	1
3.30.70.1010 Translation elongation factor EF1B, gamma chain, conserved domain	d.58.46 eEF1-gamma domain	1	1
3.30.70.1040 Dystroglycan, domain 2	d.272.1 Dystroglycan, domain 2	2	1
3.30.70.1050 Trigger factor ribosome-binding domain	d.241.2 Trigger factor ribosome-binding domain	15	10
3.30.70.1070 Sporulation related repeat	d.58.52 Sporulation related repeat	3	1
3.30.70.1120 TT1725-like	d.58.50 Hypothetical protein TT1725	1	1
3.30.70.1130 EIF_2_alpha	d.58.51 eIF-2-alpha, C-terminal domain	12	4
3.30.70.1220 TFB5-like	d.295.1 TFB5-like	6	1
3.30.70.1230 Nucleotide cyclase	d.58.29 Nucleotide cyclase	182	46
3.30.70.1240 DOPA-like domains	d.58.55 DOPA-like	8	6
3.30.70.1250 Phosphopentomutase	d.327.1 DeoB insert domain-like	66	2
3.30.70.1290 Transposase IS200-like	d.58.57 Transposase IS200-like	41	20
3.30.70.1340 MTH889-like domain	d.58.61 MTH889-like	29	21
3.30.70.1350 Cation efflux protein, cytoplasmic domain	d.52.9 Cation efflux protein cytoplasmic domain-like	29	5
3.30.70.1450 Regulator of K+ conductance, C-terminal domain	d.286.1 TrkA C-terminal domain-like	174	20
3.30.70.1480 GK1464-like	d.82.5 GK1464-like	2	2
3.30.70.1490 Cysteine protease Prp	d.64.2 TM1457-like	16	14
3.30.70.1710	d.58.56 CcmK-like	299	23
3.30.70.3250	d.58.59 Rnp2-like	9	7
3.30.110.10 Translation initiation factor 3 (IF-3), C-terminal domain	d.68.1 Translation initiation factor IF3, C-terminal domain	5	3
3.30.110.20 Alba-like domain	d.68.6 AlbA-like	44	19
3.30.110.30 C-terminal domain of ProRS	d.68.5 C-terminal domain of ProRS	38	20
3.30.110.60 YhbY-like	d.68.4 YhbY-like	4	4
3.30.110.70 Hypothetical protein apc22750. Chain B	d.230.5 YbjQ-like	27	10
3.30.160.40 Porphobilinogen deaminase, C-terminal domain	d.50.2 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	12	5
3.30.160.70 Methylated DNA-protein cysteine methyltransferase domain	c.55.7 Methylated DNA-protein cysteine methyltransferase domain	31	12
3.30.160.80 Amb V Allergen	g.6.1 Amb V allergen	3	3
3.30.160.100 Ribosome hibernation promotion factor-like	d.204.1 Ribosome binding protein Y (YfiA homologue)	20	7
3.30.160.120 Hypothetical protein MTH1880	d.214.1 Hypothetical protein MTH1880	2	2
3.30.160.140 Shew3726-like	d.354.1 Shew3726-like	1	1
3.30.160.170 FlaG-like	d.352.1 FlaG-like	1	1
3.30.160.220 YoaG	d.253.1 Hypothetical protein YoaG	2	2
3.30.160.240	d.50.5 Rv2632c-like	3	1
3.30.160.250	d.304.1 TTHA1013/TTHA0281-like	13	5
3.30.170.10 Cyclin-dependent kinase, regulatory subunit	d.97.1 Cell cycle regulatory proteins	33	18
3.30.190.10 Ribulose bisphosphate carboxylase, small subunit	d.73.1 RuBisCO, small subunit	241	176
3.30.200.40	d.246.1 mRNA decapping enzyme DcpS N-terminal domain	34	18
3.30.240.40	g.90.1 E6 C-terminal domain-like	14	1
3.30.250.10 RecA protein, C-terminal domain	d.48.1 RecA protein, C-terminal domain	94	19
3.30.260.10 TCP-1-like chaperonin intermediate domain	d.56.1 GroEL-intermediate domain like	579	173
3.30.280.10 Urease, gamma-like subunit	d.8.1 Urease, gamma-subunit	79	35
3.30.300.70 RimP-like superfamily, N-terminal	d.52.4 YhbC-like, N-terminal domain	1	1
3.30.300.100 MTH677-like	d.266.1 Hypothetical protein MTH677	7	1
3.30.300.130 Fe-S cluster assembly (FSCA)	d.52.8 Fe-S cluster assembly (FSCA) domain-like	31	7
3.30.310.70 TT1751-like domain	d.129.7 TT1751-like	4	4
3.30.310.100 YugN-like	d.129.11 YugN-like	3	1
3.30.310.110 XisI-like	d.326.1 XisI-like	7	5
3.30.310.140 sec7 domains	d.129.9 RalF, C-terminal domain	5	2
3.30.310.150	b.143.1 NAC domain	7	4
3.30.350.10 Subtilisin inhibitor-like	d.84.1 Subtilisin inhibitor	13	5
3.30.360.20	c.47.2 RNA 3'-terminal phosphate cyclase, RPTC, insert domain	24	6
3.30.370.10 Barstar-like	c.9.1 Barstar-related	51	38
3.30.379.10 Chitobiase/beta-hexosaminidase domain 2-like	d.92.2 beta-N-acetylhexosaminidase-like domain	175	73
3.30.380.10 MS2 Viral Coat Protein	d.85.1 RNA bacteriophage capsid protein	230	128
3.30.390.30	d.87.1 FAD/NAD-linked reductases, dimerisation (C-terminal) domain	442	105
3.30.390.50 CO dehydrogenase flavoprotein, C-terminal domain	d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like	116	41
3.30.413.10 Sulfite Reductase Hemoprotein, domain 1	d.134.1 Nitrite and sulphite reductase 4Fe-4S domain-like	149	42
3.30.420.110 MutS, connector domain	c.55.6 DNA repair protein MutS, domain II	50	25
3.30.420.130	c.55.5 Nitrogenase accessory factor-like	14	5
3.30.420.180 CobE/GbiG C-terminal domain	c.151.1 CobE/GbiG C-terminal domain-like	6	4
3.30.420.330	d.299.1 Ns1 effector domain-like	60	2
3.30.428.20 Rotavirus NSP2 fragment, C-terminal domain	d.13.2 Rotavirus NSP2 fragment, C-terminal domain	21	5
3.30.429.10 Macrophage Migration Inhibitory Factor	d.80.1 Tautomerase/MIF	719	149
3.30.450.80 Transcription factor LuxR-like, autoinducer-binding domain	d.110.5 Pheromone-binding domain of LuxR-like quorum-sensing transcription factors	71	8
3.30.450.150	d.110.9 GlcG-like	39	4
3.30.450.240	d.109.3 FLJ32549 C-terminal domain-like	1	1
3.30.457.10 Copper amine oxidase-like, N-terminal domain	d.82.1 Copper amine oxidase, domain N	32	22
3.30.460.30	d.58.39 Glutamyl tRNA-reductase catalytic, N-terminal domain	5	1
3.30.479.30	d.43.2 Band 7/SPFH domain	30	1
3.30.590.10 Glutamine synthetase/guanido kinase, catalytic domain	d.128.1 Glutamine synthetase/guanido kinase	412	187
3.30.720.20	d.317.1 YkuJ-like	2	2
3.30.740.10 Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	d.39.1 DLC	79	19
3.30.750.24 STAS domain	c.13.2 SpoIIaa-like	75	23
3.30.750.50 Cell-division inhibitor MinC, N-terminal domain	c.102.1 Cell-division inhibitor MinC, N-terminal domain	4	4
3.30.760.10 RNA Cap, Translation Initiation Factor Eif4e	d.86.1 eIF4e-like	104	24
3.30.780.10 SUI1-like domain	d.64.1 eIF1-like	17	2
3.30.860.10 30s Ribosomal Protein S19; Chain A	d.28.1 Ribosomal protein S19	332	64
3.30.900.10 HORMA domain	d.135.1 The spindle assembly checkpoint protein mad2	73	10
3.30.910.10 DinI-like	d.57.1 DNA damage-inducible protein DinI	3	1
3.30.910.20 Skp domain	f.48.1 OmpH-like	7	6
3.30.920.20 Gas2-like domain	d.82.4 GAS2 domain-like	1	1
3.30.1040.10 Carboxypeptidase inhibitor	g.30.1 Carboxypeptidase inhibitor	8	8
3.30.1050.10 SCP2 sterol-binding domain	d.106.1 SCP-like	121	25
3.30.1060.10 Peptide methionine sulphoxide reductase MsrA	d.58.28 Peptide methionine sulfoxide reductase	39	8
3.30.1070.10 Cell division topological specificity factor MinE	d.71.1 Cell division protein MinE topological specificity domain	8	2
3.30.1120.40 Stage V sporulation protein G	d.366.1 SpoVG-like	10	10
3.30.1140.32 Ribosomal protein S3, C-terminal domain	d.53.1 Ribosomal protein S3 C-terminal domain	385	60
3.30.1160.10 Cyanate lyase, C-terminal domain	d.72.1 Cyanase C-terminal domain	90	40
3.30.1190.10 DNA-binding protein Tfx superfamily, archaea	d.236.1 DNA-binding protein Tfx	1	1
3.30.1200.10 YggU-like	d.206.1 YggU-like	3	3
3.30.1220.10 CobW-like, C-terminal domain	d.237.1 Hypothetical protein YjiA, C-terminal domain	5	1
3.30.1230.10 YlxR-like	d.192.1 YlxR-like	1	1
3.30.1250.10 Ribosome maturation protein SBDS, N-terminal domain	d.235.1 FYSH domain	7	3
3.30.1280.10 Phosphoribosylformylglycinamidine synthase subunit PurS	d.284.1 PurS-like	26	13
3.30.1300.20 7,8-dihydroneopterin aldolase (MptD)	d.316.1 MK0786-like	14	10
3.30.1310.10 Nucleoid-associated protein YbaB-like domain	d.222.1 YbaB-like	9	5
3.30.1320.10	d.27.1 Ribosomal protein S16	330	64
3.30.1330.30	d.79.3 L30e-like	359	105
3.30.1330.40 RutC-like	d.79.1 YjgF-like	292	118
3.30.1330.50 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	d.79.5 IpsF-like	178	67
3.30.1330.60 OmpA-like domain	d.79.7 OmpA-like	156	7
3.30.1330.70 Holliday junction resolvase RusA	d.79.6 Holliday junction resolvase RusA	7	2
3.30.1330.90 D-3-phosphoglycerate dehydrogenase; domain 3	d.81.2 Serine metabolism enzymes domain	11	5
3.30.1330.110 BB2672	d.79.9 BB2672-like	4	4
3.30.1340.10 HPr-like	d.94.1 HPr-like	98	53
3.30.1340.20 3H domain	d.94.2 Putative transcriptional regulator TM1602, C-terminal domain	1	1
3.30.1350.10 Thionin-like	g.13.1 Crambin-like	47	32
3.30.1360.10 RNA polymerase, RBP11-like subunit	d.74.3 RBP11-like subunits of RNA polymerase	448	102
3.30.1360.20 Transcriptional coactivator/pterin dehydratase	d.74.1 PCD-like	55	33
3.30.1360.30 GAD-like domain	d.74.4 GAD domain-like	28	17
3.30.1360.60 Glucose permease domain IIB	d.95.1 Glucose permease domain IIB	8	4
3.30.1360.70 Arginyl tRNA synthetase N-terminal domain	d.67.2 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain	10	4
3.30.1360.100 General secretion pathway protein M, EpsM	d.67.4 General secretion pathway protein M, EpsM	8	2
3.30.1360.170	d.207.1 Thymidylate synthase-complementing protein Thy1	135	36
3.30.1370.50 R3H-like domain	d.68.7 R3H domain	11	3
3.30.1370.70 Scaffold protein Nfu/NifU, N-terminal domain	d.267.1 Hypothetical protein SAV1430	7	2
3.30.1370.80 Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain	d.129.5 MoaD-related protein, C-terminal domain	4	4
3.30.1370.110	d.68.8 SMR domain-like	10	1
3.30.1380.10	d.65.1 Hedgehog/DD-peptidase	90	25
3.30.1390.10	d.45.1 ClpS-like	79	29
3.30.1400.10 ZipA, C-terminal FtsZ-binding domain	d.129.4 Cell-division protein ZipA, C-terminal domain	12	12
3.30.1410.10 GTP cyclohydrolase I feedback regulatory protein GFRP	d.205.1 GTP cyclohydrolase I feedback regulatory protein, GFRP	35	35
3.30.1440.10	d.77.1 RL5-like	401	92
3.30.1470.10 Photosystem I PsaD, reaction center subunit II	d.187.1 Photosystem I subunit PsaD	15	1
3.30.1480.10 NusA, N-terminal domain	d.202.1 Transcription factor NusA, N-terminal domain	7	4
3.30.1490.100 DNA polymerase, Y-family, little finger domain	d.240.1 Lesion bypass DNA polymerase (Y-family), little finger domain	405	94
3.30.1490.140 Amyloidogenic glycoprotein, copper-binding domain	d.230.3 Amyloid beta a4 protein copper binding domain (domain 2)	26	3
3.30.1490.170 Allophycocyanin linker chain (domain)	d.30.1 Allophycocyanin linker chain (domain)	2	2
3.30.1520.10 Phox-like domain	d.189.1 PX domain	71	13
3.30.1550.10 Ribosomal protein L11/L12, N-terminal domain	d.47.1 Ribosomal L11/L12e N-terminal domain	131	59
3.30.1560.10 Mago nashi	d.232.1 Mago nashi protein	17	11
3.30.1570.10 Protein-tyrosine phosphatase, YopH, N-terminal domain	d.195.1 YopH tyrosine phosphatase N-terminal domain	3	3
3.30.1580.10 Head-to-tail joining protein W	d.186.1 Head-to-tail joining protein W, gpW	3	1
3.30.1610.10 Peptidase S59, nucleoporin	b.119.1 C-terminal autoproteolytic domain of nucleoporin nup98	25	2
3.30.1660.10 Flavin-binding protein dodecin	d.230.2 Dodecin-like	150	74
3.30.1680.10 ligand-binding face of the semaphorins, domain 2	g.16.2 Plexin repeat	99	8
3.30.1750.10 Hemolytic lectin CEL-III, C-terminal domain	d.281.1 Hemolytic lectin CEL-III, C-terminal domain	13	6
3.30.1810.10 YdfO-like	d.358.1 YdfO-like	1	1
3.30.1820.10 Lp2179-like	d.376.1 Lp2179-like	1	1
3.30.1830.10 YehR-like	d.371.1 YehR-like	1	1
3.30.1960.10 tRNA wybutosine-synthesizing-like	d.282.1 SSo0622-like	11	2
3.30.1970.10 AF2331-like	d.337.1 AF2331-like	2	2
3.30.1980.10 Hypothetical protein YunC	d.249.1 Hypothetical protein Ta1206	1	1
3.30.2000.10 Phage tail protein-like	d.323.1 Phage tail protein-like	6	7
3.30.2020.10 NE0471-like N-terminal domain	d.331.1 NE0471 N-terminal domain-like	2	2
3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains	d.225.1 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains	294	12
3.30.2120.10 Bacillus phage protein-like	d.277.1 Bacillus phage protein	2	2
3.30.2190.10 PG1857-like	d.360.1 PG1857-like	2	2
3.30.2230.10 DUSP-like	d.324.1 DUSP-like	18	1
3.30.2260.10 Enhancer of rudimentary	d.330.1 ERH-like	8	7
3.30.2310.20 RelE-like	d.298.1 RelE-like	111	15
3.30.2320.30	d.81.4 V-type ATPase subunit E-like	11	3
3.30.2380.10 CGI121/TPRKB	d.329.1 PF0523-like	12	1
3.40.5.10 Ribosomal protein L9, N-terminal domain	d.100.1 L9 N-domain-like	208	45
3.40.10.10 DNA Methylphosphotriester Repair Domain	g.48.1 Ada DNA repair protein, N-terminal domain (N-Ada 10)	5	2
3.40.33.10 CAP	d.111.1 PR-1-like	62	4
3.40.35.10 Phosphotransferase system, sorbose subfamily IIB component	c.38.1 PTS IIb component	15	5
3.40.50.170 Formyl transferase, N-terminal domain	c.65.1 Formyltransferase	156	64
3.40.50.180 Methylesterase CheB, C-terminal domain	c.40.1 Methylesterase CheB, C-terminal domain	4	3
3.40.50.280 Cobalamin-binding domain	c.23.6 Cobalamin (vitamin B12)-binding domain	107	46
3.40.50.360	c.23.5 Flavoproteins	724	233
3.40.50.410 von Willebrand factor, type A domain	c.62.1 vWA-like	385	111
3.40.50.510 Phosphotransferase system, mannose-type IIA component	c.54.1 PTS system fructose IIA component-like	69	19
3.40.50.800 Anticodon-binding domain	c.51.1 Class II aaRS ABD-related	238	92
3.40.50.850 Isochorismatase-like	c.33.1 Isochorismatase-like hydrolases	157	16
3.40.50.880	c.23.16 Class I glutamine amidotransferase-like	815	241
3.40.50.920	c.48.1 TK C-terminal domain-like	239	110
3.40.50.960 Lumazine/riboflavin synthase	c.16.1 Lumazine synthase	515	140
3.40.50.1110 SGNH hydrolase	c.23.10 SGNH hydrolase	199	63
3.40.50.1450 HybD-like	c.56.1 HybD-like	15	8
3.40.50.1470 Peptidyl-tRNA hydrolase	c.56.3 Peptidyl-tRNA hydrolase-like	75	4
3.40.50.1950 Flavin prenyltransferase-like	c.34.1 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	67	28
3.40.50.7700 PurE domain	c.23.8 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)	174	25
3.40.50.9100 Dehydroquinase, class II	c.23.13 Type II 3-dehydroquinate dehydratase	513	138
3.40.50.9200 Hypothetical protein MTH538	c.23.3 Hypothetical protein MTH538	1	1
3.40.50.10070 TolB, N-terminal domain	c.51.2 TolB, N-terminal domain	20	10
3.40.50.10110 DNA polymerase III subunit chi	c.128.1 DNA polymerase III chi subunit	3	2
3.40.50.10140 Toll/interleukin-1 receptor homology (TIR) domain	c.23.2 Toll/Interleukin receptor TIR domain	59	8
3.40.50.10150 B12-dependent dehydatase associated subunit	c.51.3 B12-dependent dehydatase associated subunit	48	24
3.40.50.10160 MTH777-like	c.115.1 Hypothetical protein MTH777 (MT0777)	2	2
3.40.50.10220 DNA polymerase III, psi subunit	c.126.1 DNA polymerase III psi subunit	3	2
3.40.50.10230 Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase	c.23.17 Precorrin-8X methylmutase CbiC/CobH	17	8
3.40.50.10240 Thiamin pyrophosphokinase, catalytic domain	c.100.1 Thiamin pyrophosphokinase, catalytic domain	33	5
3.40.50.10260 YjeF N-terminal domain	c.104.1 YjeF N-terminal domain-like	47	3
3.40.50.10300 CoaB-like	c.72.3 CoaB-like	18	12
3.40.50.10310 Creatininase	c.125.1 Creatininase	87	24
3.40.50.10320 LmbE-like	c.134.1 LmbE-like	64	8
3.40.50.10610 ABC-type transport auxiliary lipoprotein component	c.51.6 XCC0632-like	13	9
3.40.50.10790 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal	c.132.1 Bacterial fluorinating enzyme, N-terminal domain	77	45
3.40.50.10900	c.56.8 Cgl1923-like	23	3
3.40.50.10990	c.144.1 RibA-like	7	3
3.40.50.11170	d.321.1 STIV B116-like	10	4
3.40.50.11310	c.67.2 PhnH-like	3	1
3.40.50.12300	c.143.1 CofD-like	11	5
3.40.80.10 Peptidoglycan recognition protein-like	d.118.1 N-acetylmuramoyl-L-alanine amidase-like	257	29
3.40.198.10 Delta-endotoxin CytB-like	d.103.1 CytB endotoxin-like	16	13
3.40.220.10 Leucine Aminopeptidase, subunit E, domain 1	c.50.1 Macro domain-like	465	50
3.40.225.10 Class II aldolase/adducin N-terminal domain	c.74.1 AraD/HMP-PK domain-like	110	57
3.40.350.10 Creatinase/prolidase N-terminal domain	c.55.2 Creatinase/prolidase N-terminal domain	171	48
3.40.430.10 Dihydrofolate Reductase, subunit A	c.71.1 Dihydrofolate reductase-like	730	188
3.40.449.10 Phosphoenolpyruvate Carboxykinase, domain 1	c.109.1 PEP carboxykinase N-terminal domain	108	28
3.40.462.10 FAD-linked oxidases, C-terminal domain	d.58.32 FAD-linked oxidases, C-terminal domain	79	48
3.40.630.20 Peptidase C15, pyroglutamyl peptidase I-like	c.56.4 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	68	18
3.40.800.10 Ureohydrolase domain	c.42.1 Arginase/deacetylase	380	192
3.40.830.10 LigB-like	c.56.6 LigB-like	49	5
3.40.920.10 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	c.64.1 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	27	20
3.40.930.10 Mannitol-specific EII; Chain A	d.112.1 Phoshotransferase/anion transport protein	39	13
3.40.980.10 MoaB/Mog-like domain	c.57.1 Molybdenum cofactor biosynthesis proteins	184	90
3.40.1000.10 Mog1/PsbP, alpha/beta/alpha sandwich	d.107.1 Mog1p/PsbP-like	26	8
3.40.1000.20 TM1622-like	d.312.1 TM1622-like	1	1
3.40.1030.10 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	c.27.1 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	187	40
3.40.1110.10 Calcium-transporting ATPase, cytoplasmic domain N	d.220.1 Metal cation-transporting ATPase, ATP-binding domain N	161	32
3.40.1170.10 DNA repair protein MutS, domain I	d.75.2 DNA repair protein MutS, domain I	46	23
3.40.1180.10 Decaprenyl diphosphate synthase-like	c.101.1 Undecaprenyl diphosphate synthase	118	20
3.40.1190.10 Mur-like, catalytic domain	c.72.2 MurD-like peptide ligases, catalytic domain	85	32
3.40.1210.10 Survival protein SurE-like phosphatase/nucleotidase	c.106.1 SurE-like	89	10
3.40.1230.10 MTH938-like	c.103.1 MTH938-like	12	9
3.40.1260.10 DsrEFH-like	c.114.1 DsrEFH-like	54	40
3.40.1340.10 RNA polymerase, Rpb5, N-terminal domain	c.52.3 Eukaryotic RPB5 N-terminal domain	115	26
3.40.1350.20	d.374.1 TTHC002-like	2	2
3.40.1390.10 MurE/MurF, N-terminal domain	c.98.1 MurE/MurF N-terminal domain	68	4
3.40.1390.20 HprK N-terminal domain-like	c.98.2 HprK N-terminal domain-like	14	10
3.40.1400.10 Sugar-phosphate isomerase, RpiB/LacA/LacB	c.121.1 Ribose/Galactose isomerase RpiB/AlsB	109	35
3.40.1410.10 Chorismate lyase-like	d.190.1 Chorismate lyase-like	81	47
3.40.1420.10 Inhibitor of vertebrate lysozyme	d.233.1 Inhibitor of vertebrate lysozyme, Ivy	10	7
3.40.1420.30	d.98.2 BT0923-like	9	3
3.40.1440.10 GIY-YIG endonuclease	d.226.1 GIY-YIG endonuclease	17	3
3.40.1450.10 BPG-independent phosphoglycerate mutase, domain B	c.105.1 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain	13	4
3.40.1460.10 Nuclease A inhibitor-like	d.221.1 Nuclease A inhibitor (NuiA)	3	3
3.40.1490.10 Bit1	c.131.1 Peptidyl-tRNA hydrolase II	24	8
3.40.1500.10 Coproporphyrinogen III oxidase, aerobic	d.248.1 Coproporphyrinogen III oxidase	26	19
3.40.1510.10 Hut operon regulatory protein HutP	d.275.1 Hut operon positive regulatory protein HutP	55	24
3.40.1530.10 TTHA1528-like	d.319.1 TTHA1528-like	4	2
3.40.1550.10 CheC-like	d.252.1 CheC-like	28	7
3.40.1580.10 SMI1/KNR4-like	d.369.1 SMI1/KNR4-like	6	4
3.40.1590.10 NMB0488-like	d.351.1 NMB0488-like	6	1
3.40.1600.10 PH1570-like	d.342.1 PH1570-like	2	2
3.40.1650.10 RbsD-like domain	c.133.1 RbsD-like	101	21
3.40.1760.10 YfbM-like super family	d.276.1 Hypothetical protein yfbM	2	2
3.40.1790.10 Indigoidine synthase domain	c.138.1 Indigoidine synthase A-like	20	6
3.40.1840.10 YNR034W-A-like	d.110.10 YNR034W-A-like	2	1
3.50.4.10 Hepatocyte Growth Factor	g.10.1 Hairpin loop containing domain-like	160	25
3.50.7.10 GroEL	c.8.5 GroEL apical domain-like	613	200
3.50.30.10 Phosphohistidine domain	c.8.1 Phosphohistidine domain	48	23
3.50.30.20 Carbamoyl-phosphate synthase small subunit, N-terminal domain	c.8.3 Carbamoyl phosphate synthetase, small subunit N-terminal domain	40	40
3.50.30.30	c.8.4 PA domain	154	30
3.50.30.40 Ribonuclease E inhibitor RraA/RraA-like	c.8.7 RraA-like	35	13
3.50.30.50 Putative cyclase	c.8.8 Putative cyclase	37	3
3.50.30.60 LD-carboxypeptidase A C-terminal domain-like	c.8.10 LD-carboxypeptidase A C-terminal domain-like	69	8
3.50.30.70 Swiveling domain of dehydratase reactivase alpha subunit	c.8.6 Swiveling domain of dehydratase reactivase alpha subunit	6	6
3.50.40.10 Phenylalanyl-trna Synthetase, Chain B, domain 3	b.153.1 PheT/TilS domain	38	10
3.50.80.10	c.110.1 DTD-like	161	9
3.50.90.10 YerB-like	c.153.1 YerB-like	1	1
3.55.10.10 Archease domain	d.208.1 MTH1598-like	6	2
3.55.20.10 Protein-L-isoaspartyl O-methyltransferase, C-terminal domain	d.197.1 Protein-L-isoaspartyl O-methyltransferase, C-terminal domain	2	2
3.60.9.10 Aldehyde ferredoxin oxidoreductase, N-terminal domain	d.152.1 Aldehyde ferredoxin oxidoreductase, N-terminal domain	30	10
3.60.10.10 Endonuclease/exonuclease/phosphatase	d.151.1 DNase I-like	266	51
3.60.20.20 Inosine monophosphate cyclohydrolase-like	d.153.2 Archaeal IMP cyclohydrolase PurO	13	13
3.60.40.10 PPM-type phosphatase domain	d.219.1 PP2C-like	111	3
3.60.90.10 S-adenosylmethionine decarboxylase	d.156.1 S-adenosylmethionine decarboxylase	38	19
3.60.110.10 Carbon-nitrogen hydrolase	d.160.1 Carbon-nitrogen hydrolase	218	30
3.60.120.10 Anthranilate synthase	d.161.1 ADC synthase	77	23
3.60.150.10 Chorismate synthase AroC	d.258.1 Chorismate synthase, AroC	37	22
3.90.45.10 Peptide deformylase	d.167.1 Peptide deformylase	242	86
3.90.56.10 Monooxygenase component MmoB/DmpM	d.137.1 Monooxygenase (hydroxylase) regulatory protein	31	9
3.90.78.10 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain	d.146.1 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain	17	6
3.90.80.10 Inorganic pyrophosphatase	b.40.5 Inorganic pyrophosphatase	231	62
3.90.100.10 Orn/Lys/Arg decarboxylase, C-terminal domain	d.125.1 Ornithine decarboxylase C-terminal domain	18	3
3.90.190.20 Mur ligase, C-terminal domain	c.59.1 MurD-like peptide ligases, peptide-binding domain	84	32
3.90.245.10 Ribonucleoside hydrolase-like	c.70.1 Nucleoside hydrolase	89	32
3.90.280.10 PEBP-like	b.17.1 PEBP-like	43	16
3.90.290.10 TGF-beta binding (TB) domain	g.23.1 TB module/8-cys domain	22	8
3.90.310.10 ENV polyprotein, receptor-binding domain	b.20.1 ENV polyprotein, receptor-binding domain	3	3
3.90.330.10 Nitrile hydratase alpha /Thiocyanate hydrolase gamma	d.149.1 Nitrile hydratase alpha chain	125	19
3.90.420.10 Oxidoreductase, molybdopterin-binding domain	d.176.1 Oxidoreductase molybdopterin-binding domain	52	27
3.90.430.10 Copper fist DNA-binding domain	g.47.1 Zinc domain conserved in yeast copper-regulated transcription factors	1	1
3.90.460.10 Ferredoxin thioredoxin reductase catalytic beta subunit	g.36.1 Ferredoxin thioredoxin reductase (FTR), catalytic beta chain	8	6
3.90.470.10 Ribosomal protein L22/L17	d.55.1 Ribosomal protein L22	384	106
3.90.520.10 SMAD MH1 domain	d.164.1 SMAD MH1 domain	20	4
3.90.570.10 Amyloidogenic glycoprotein, heparin-binding domain	d.170.2 A heparin-binding domain	13	1
3.90.730.10 Ribonuclease T2-like	d.124.1 Ribonuclease Rh-like	47	19
3.90.740.10 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	b.51.1 ValRS/IleRS/LeuRS editing domain	81	21
3.90.870.10 DHBP synthase	d.115.1 YrdC/RibB	62	28
3.90.940.10	a.143.1 RPB6/omega subunit-like	225	54
3.90.940.20 RPB5-like RNA polymerase subunit	d.78.1 RPB5-like RNA polymerase subunit	128	28
3.90.950.10	c.51.4 ITPase-like	75	44
3.90.950.20 CinA-like	c.51.5 CinA-like	19	2
3.90.960.10 YbaK/aminoacyl-tRNA synthetase-associated domain	d.116.1 YbaK/ProRS associated domain	28	8
3.90.1000.10 Hypothetical protein TM0875	d.238.1 Hypothetical protein TM0875	1	1
3.90.1030.10 Ribosomal protein L17	d.188.1 Prokaryotic ribosomal protein L17	272	53
3.90.1140.10 Cyclic phosphodiesterase	d.61.1 LigT-like	42	9
3.90.1150.20 Transcription regulator MotA, C-terminal domain	d.199.1 DNA-binding C-terminal domain of the transcription factor MotA	6	6
3.90.1150.30	d.198.3 YjbR-like	7	2
3.90.1150.50	d.315.1 TRCF domain-like	3	2
3.90.1170.30 Pyrimidine nucleoside phosphorylase-like, C-terminal domain	d.41.3 Pyrimidine nucleoside phosphorylase C-terminal domain	47	8
3.90.1170.40 Molybdopterin biosynthesis MoaE subunit	d.41.5 Molybdopterin synthase subunit MoaE	27	10
3.90.1210.10 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	b.85.1 AFP III-like domain	57	43
3.90.1220.10 Cellulose docking domain, dockering	g.55.1 Cellulose docking domain, dockering	6	2
3.90.1280.10 HSP33 redox switch-like	g.81.1 HSP33 redox switch-like	5	5
3.90.1290.10 Plakin repeat	d.211.2 Plakin repeat	9	4
3.90.1300.10 Amidase signature (AS) domain	c.117.1 Amidase signature (AS) enzymes	154	50
3.90.1350.10 Exotoxin A, middle domain	f.1.5 Exotoxin A, middle domain	4	2
3.90.1400.10 Rotavirus NSP2 fragment, N-terminal domain	d.216.1 Rotavirus NSP2 fragment, N-terminal domain	21	5
3.90.1420.10 Rubisco LSMT, substrate-binding domain	a.166.1 RuBisCo LSMT C-terminal, substrate-binding domain	26	21
3.90.1440.10 SecA, preprotein cross-linking domain	a.162.1 Pre-protein crosslinking domain of SecA	11	8
3.90.1450.10 Guanylin	d.234.1 Proguanylin	1	1
3.90.1460.10 GTF2I-like	d.288.1 GTF2I-like repeat	10	1
3.90.1480.10 Alpha-2,3-sialyltransferase	c.130.1 Alpha-2,3/8-sialyltransferase CstII	15	6
3.90.1560.10 ComB-like	c.148.1 ComB-like	15	3
3.90.1650.10 PA1123-like	d.364.1 PA1123-like	1	1
3.90.1670.10 FdhE-like domain	e.59.1 FdhE-like	2	1
4.10.40.30 CART, C-terminal domain	g.3.17 Satiety factor CART (cocaine and amphetamine regulated transcript)	1	1
4.10.49.10 Cytochrome c oxidase subunit VIIc	f.23.6 Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)	62	28
4.10.51.10 Cytochrome C Oxidase, chain K	f.23.5 Mitochondrial cytochrome c oxidase subunit VIIb	62	28
4.10.70.10 Disintegrin domain	g.20.1 Blood coagulation inhibitor (disintegrin)	48	15
4.10.75.10 Elafin-like	g.3.14 Elafin-like	9	3
4.10.81.10 Cytochrome c oxidase, subunit 8	f.23.7 Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)	62	28
4.10.91.10 Cytochrome c oxidase, subunit VIIa	f.23.4 Mitochondrial cytochrome c oxidase subunit VIIa	62	28
4.10.93.10 Mitochondrial cytochrome c oxidase subunit VIc/VIIs	f.23.3 Mitochondrial cytochrome c oxidase subunit VIc	62	28
4.10.95.10 Cytochrome c oxidase, subunit VIa	f.23.2 Mitochondrial cytochrome c oxidase subunit VIa	62	28
4.10.110.20 Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain	g.16.3 Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain	1	1
4.10.160.10 Methanol dehydrogenase, beta subunit	a.137.2 Methanol dehydrogenase subunit	35	20
4.10.170.10 p53-like tetramerisation domain	a.53.1 p53 tetramerization domain	95	54
4.10.260.10 Transducin (heterotrimeric G protein), gamma chain	a.137.3 Transducin (heterotrimeric G protein), gamma chain	37	15
4.10.260.20 Iron hydrogenase, small subunit	a.137.4 Fe-only hydrogenase smaller subunit	2	2
4.10.280.10 Helix-loop-helix DNA-binding domain	a.38.1 HLH, helix-loop-helix DNA-binding domain	61	29
4.10.280.30 Bcr-Abl oncoprotein oligomerisation domain	a.147.1 Bcr-Abl oncoprotein oligomerization domain	8	8
4.10.320.10 E3-binding domain	a.9.1 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	43	12
4.10.490.10 High potential iron-sulphur protein	g.35.1 HIPIP (high potential iron protein)	33	29
4.10.520.10 IHF-like DNA-binding proteins	a.55.1 IHF-like DNA-binding proteins	80	34
4.10.640.10 Ribosomal protein S18	a.4.8 Ribosomal protein S18	331	72
4.10.670.10 Cholecystokinin A receptor, N-terminal domain	g.33.1 Cholecystokinin A receptor, N-domain	1	1
4.10.760.10 Agouti domain	g.3.5 Agouti-related protein	5	2
4.10.860.20 Rabenosyn, Rab binding domain	a.2.19 Rabenosyn-5 Rab-binding domain-like	24	4
4.10.940.10 Quinohemoprotein amine dehydrogenase, gamma subunit structural domain	a.137.9 Quinohemoprotein amine dehydrogenase C chain	4	4
4.10.1010.10 Apical membrane antigen 1	g.61.1 Apical membrane antigen 1	1	3
4.10.1040.10 DM DNA-binding domain	g.62.1 Cysteine-rich DNA binding domain, (DM domain)	1	1
4.10.1050.10 At2g23090-like	g.82.1 Expressed protein At2g23090/F21P24.15	1	1
4.10.1080.10 TSP type-3 repeat	g.75.1 TSP type-3 repeat	1	1
4.10.1210.10 Atu1913-like	b.156.1 Atu1913-like	1	1
4.10.1240.10 GPCR, family 2, extracellular hormone receptor domain	g.76.1 Hormone receptor domain	46	2

Silver standard consensus indicates a pair of SCOP and CATH superfamilies that are similar but that may contain occasional differences in domain boundary assignment and that may have differences between resources in which structures have been classified.

Download all "silver" entries as: csv | json

CATH Superfamily	SCOP Superfamily	# CATH domains	# SCOP domains
1.10.8.140 PDCD5-like	a.5.6 Double-stranded DNA-binding domain	6	2
1.10.10.60 Homeodomain-like	a.4.1 Homeodomain-like	1091	430
1.10.10.490 Beta-catenin-interacting ICAT	a.161.1 beta-catenin-interacting protein ICAT	3	3
1.10.10.790	a.217.1 Surp module (SWAP domain)	8	5
1.10.20.10 Histone, subunit A	a.22.1 Histone-fold	1373	350
1.10.30.10 High mobility group box domain	a.21.1 HMG-box	87	34
1.10.110.10 Plant lipid-transfer and hydrophobic proteins	a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	68	41
1.10.150.120 [2Fe-2S]-binding domain	a.56.1 CO dehydrogenase ISP C-domain like	112	45
1.10.150.380	a.182.1 GatB/YqeY motif	41	10
1.10.260.40 lambda repressor-like DNA-binding domains	a.35.1 lambda repressor-like DNA-binding domains	645	267
1.10.287.90	f.17.2 Cytochrome c oxidase subunit II-like, transmembrane region	90	46
1.10.287.110 DnaJ domain	a.2.3 Chaperone J-domain	94	14
1.10.287.810 Mitochondrial import inner membrane translocase subunit tim13 like domains	g.83.1 Tim10-like	20	5
1.10.287.1130 CytochromE C oxidase copper chaperone	a.17.1 Cysteine alpha-hairpin motif	9	4
1.10.357.10 Tetracycline Repressor, domain 2	a.121.1 Tetracyclin repressor-like, C-terminal domain	796	158
1.10.443.10 Intergrase catalytic core	d.163.1 DNA breaking-rejoining enzymes	101	91
1.10.490.10 Globins	a.1.1 Globin-like	2636	1542
1.10.490.30 Colicin	f.1.1 Colicin	7	5
1.10.533.10 Death Domain, Fas	a.77.1 DEATH domain	314	37
1.10.720.40	a.140.1 LEM domain	6	7
1.10.730.10 Isoleucyl-tRNA Synthetase; Domain 1	a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	167	38
1.10.760.10 Cytochrome c-like domain	a.3.1 Cytochrome c	1016	395
1.10.800.10 Aromatic amino acid hydroxylase	d.178.1 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains	68	24
1.10.950.10 Villin headpiece domain	a.14.1 VHP, Villin headpiece domain	21	10
1.10.1030.10 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	a.92.1 Carbamoyl phosphate synthetase, large subunit connection domain	40	40
1.10.1200.120	f.16.1 Gated mechanosensitive channel	11	5
1.10.1710.10 ProQ/FinO domain	a.136.1 FinO-like	13	6
1.10.4000.10 Flagellar transcriptional activator FlhD	a.145.1 Flagellar transcriptional activator FlhD	10	6
1.20.5.710 Single helix bin	a.108.1 Ribosomal protein L7/12, oligomerisation (N-terminal) domain	9	38
1.20.58.460 Hyaluronidase post-catalytic domain-like	a.246.1 Hyaluronidase post-catalytic domain-like	69	18
1.20.58.480	a.266.1 Indolic compounds 2,3-dioxygenase-like	85	18
1.20.120.140	a.24.13 Domain of the SRP/SRP receptor G-proteins	83	51
1.20.120.180 Proteasome activator pa28, C-terminal domain	a.24.8 Proteasome activator	84	28
1.20.140.10 Butyryl-CoA Dehydrogenase, subunit A, domain 3	a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like	513	87
1.20.272.10	a.80.1 post-AAA+ oligomerization domain-like	129	64
1.20.920.10 Bromodomain-like	a.29.2 Bromodomain	914	18
1.20.1050.10	a.45.1 GST C-terminal domain-like	1403	511
1.20.1250.10	a.26.1 4-helical cytokines	349	192
1.20.1270.50 Glycoside hydrolase family 38, central domain	a.8.3 Families 57/38 glycoside transferase middle domain	66	54
1.20.1290.10 AhpD-like	a.152.1 AhpD-like	118	82
1.50.10.10	a.102.1 Six-hairpin glycosidases	374	102
1.50.10.20	a.102.4 Terpenoid cyclases/Protein prenyltransferases	379	239
2.10.25.10 Laminin	g.3.11 EGF/Laminin	796	374
2.10.25.20 reovirus attachment protein sigma1; domain 1	b.83.1 Fibre shaft of virus attachment proteins	32	18
2.10.60.10 CD59	g.7.1 Snake toxin-like	340	200
2.10.69.10 Cysteine Protease (Bromelain) Inhibitor, subunit H	g.3.13 Bowman-Birk inhibitor, BBI	34	21
2.10.90.10 Cystine-knot cytokines	g.17.1 Cystine-knot cytokines	408	161
2.10.109.10 Umud Fragment, subunit A	b.87.1 LexA/Signal peptidase	69	33
2.10.270.10 Cholin Binding	b.109.1 Cell wall binding repeat	67	19
2.30.29.30 Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	b.55.1 PH domain-like	818	307
2.30.30.10 Integrase, C-terminal domain superfamily, retroviral	b.34.7 DNA-binding domain of retroviral integrase	21	15
2.30.30.40 SH3 Domains	b.34.2 SH3-domain	835	227
2.30.30.100	b.38.1 Sm-like ribonucleoproteins	1196	303
2.30.30.190 CAP Gly-rich-like domain	b.34.10 Cap-Gly domain	53	26
2.30.40.10 Urease, subunit C, domain 1	b.92.1 Composite domain of metallo-dependent hydrolases	518	176
2.30.42.10	b.36.1 PDZ domain-like	878	241
2.30.110.10 Electron Transport, Fmn-binding Protein; Chain A	b.45.1 FMN-binding split barrel	345	100
2.40.37.10 Lyase, Ornithine Decarboxylase; Chain A, domain 1	b.49.2 Alanine racemase C-terminal domain-like	247	57
2.40.50.140 Nucleic acid-binding proteins	b.40.4 Nucleic acid-binding proteins	2602	734
2.40.50.970	b.40.14 HupF/HypC-like	10	6
2.40.128.20	b.60.1 Lipocalins	1113	377
2.60.34.10 Substrate Binding Domain Of DNAk; Chain A, domain 1	b.130.1 Heat shock protein 70kD (HSP70), peptide-binding domain	117	13
2.60.40.60 Cadherins	b.1.6 Cadherin-like	282	35
2.60.40.150 C2 domain	b.7.1 C2 domain (Calcium/lipid-binding domain, CaLB)	346	73
2.60.40.550	b.16.1 Ecotin, trypsin inhibitor	35	25
2.60.40.730	b.1.13 Superoxide reductase-like	94	29
2.60.40.790	b.15.1 HSP20-like chaperones	213	67
2.60.40.1180 Golgi alpha-mannosidase II	b.71.1 Glycosyl hydrolase domain	1459	429
2.60.120.20	b.121.4 Positive stranded ssRNA viruses	1617	408
2.60.120.200	b.29.1 Concanavalin A-like lectins/glucanases	2284	1081
2.60.120.260 Galactose-binding domain-like	b.18.1 Galactose-binding domain-like	1295	404
2.60.120.320 Thiamin pyrophosphokinase, thiamin-binding domain	b.82.6 Thiamin pyrophosphokinase, substrate-binding domain	10	5
2.60.210.10 Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	b.8.1 TRAF domain-like	138	65
2.70.40.10	b.85.4 dUTPase-like	411	97
2.70.70.10 Glucose Permease (Domain IIA)	b.84.3 Duplicated hybrid motif	71	15
2.70.130.10 Mannose-6-phosphate receptor binding domain	b.64.1 Mannose 6-phosphate receptor domain	69	40
2.102.10.10 Rieske [2Fe-2S] iron-sulphur domain	b.33.1 ISP domain	393	106
2.110.10.10 Hemopexin-like domain	b.66.1 Hemopexin-like domain	55	20
2.120.10.10	b.68.1 Sialidases	698	173
2.160.10.10 Hexapeptide repeat proteins	b.81.1 Trimeric LpxA-like enzymes	617	150
3.10.20.90 Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	d.15.1 Ubiquitin-like	1642	339
3.10.20.120	d.15.6 Superantigen toxins, C-terminal domain	256	149
3.10.20.410	b.167.1 FimD N-terminal domain-like	12	4
3.10.50.40	d.26.1 FKBP-like	425	134
3.10.129.10 Hotdog Thioesterase	d.38.1 Thioesterase/thiol ester dehydrase-isomerase	1146	286
3.10.180.10 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	806	254
3.10.450.30 Microbial ribonucleases	d.1.1 Microbial ribonucleases	352	289
3.10.450.50	d.17.4 NTF2-like	911	324
3.10.520.10 ApbE-like domains	d.96.2 ApbE-like	3	2
3.20.20.60 Phosphoenolpyruvate-binding domains	c.1.12 Phosphoenolpyruvate/pyruvate domain	639	191
3.20.20.80 Glycosidases	c.1.8 (Trans)glycosidases	3715	1294
3.20.20.140 Metal-dependent hydrolases	c.1.9 Metallo-dependent hydrolases	1236	292
3.20.20.150 Divalent-metal-dependent TIM barrel enzymes	c.1.15 Xylose isomerase-like	560	181
3.20.70.20	c.7.1 PFL-like glycyl radical enzymes	196	59
3.30.10.10 Trypsin Inhibitor V, subunit A	d.40.1 CI-2 family of serine protease inhibitors	63	44
3.30.30.90	d.361.1 PB2 C-terminal domain-like	14	3
3.30.70.360	d.58.19 Bacterial exopeptidase dimerisation domain	146	28
3.30.110.40 TusA-like domain	d.68.3 SirA-like	9	4
3.30.160.270	d.270.1 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain	10	2
3.30.310.50 Alpha-D-phosphohexomutase, C-terminal domain	d.129.2 Phosphoglucomutase, C-terminal domain	97	29
3.30.310.80 Kinase associated domain 1, KA1	d.129.6 KA1-like	35	19
3.30.360.10 Dihydrodipicolinate Reductase; domain 2	d.81.1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	1285	474
3.30.390.10 Enolase-like, N-terminal domain	d.54.1 Enolase N-terminal domain-like	1323	198
3.30.420.10 Ribonuclease H-like superfamily/Ribonuclease H	c.55.3 Ribonuclease H-like	1712	502
3.30.505.10 SH2 domain	d.93.1 SH2 domain	661	266
3.30.565.10 Histidine kinase-like ATPase, C-terminal domain	d.122.1 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	804	198
3.30.572.10 Thymidylate synthase/dCMP hydroxymethylase domain	d.117.1 Thymidylate synthase/dCMP hydroxymethylase	605	194
3.30.710.10 Potassium Channel Kv1.1; Chain A	d.42.1 POZ domain	415	77
3.30.720.10 Signal recognition particle alu RNA binding heterodimer, srp9/1	d.49.1 Signal recognition particle alu RNA binding heterodimer, SRP9/14	17	8
3.30.830.10 Metalloenzyme, LuxS/M16 peptidase-like	d.185.1 LuxS/MPP-like metallohydrolase	786	238
3.30.930.10 Bira Bifunctional Protein; Domain 2	d.104.1 Class II aaRS and biotin synthetases	825	231
3.30.1330.10 PurM-like, N-terminal domain	d.79.4 PurM N-terminal domain-like	100	43
3.30.1330.20 Tubulin/FtsZ, C-terminal domain	d.79.2 Tubulin C-terminal domain-like	433	58
3.30.1370.10 K Homology domain, type 1	d.51.1 Eukaryotic type KH-domain (KH-domain type I)	127	56
3.30.1460.10	d.198.1 Type III secretory system chaperone-like	76	43
3.30.1490.40	d.76.1 GYF domain	14	6
3.30.1500.10 Haem-binding HasA	d.35.1 Heme-binding protein A (HasA)	57	7
3.40.20.10 Severin	d.109.1 Actin depolymerizing proteins	286	132
3.40.30.10 Glutaredoxin	c.47.1 Thioredoxin-like	3880	1103
3.40.50.20	c.30.1 PreATP-grasp domain	518	194
3.40.50.80 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module	c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain	278	87
3.40.50.150 Vaccinia Virus protein VP39	c.66.1 S-adenosyl-L-methionine-dependent methyltransferases	2396	577
3.40.50.200 Peptidase S8/S53 domain	c.41.1 Subtilisin-like	433	176
3.40.50.261 Succinyl-CoA synthetase domains	c.23.4 Succinyl-CoA synthetase domains	125	65
3.40.50.300 P-loop containing nucleotide triphosphate hydrolases	c.37.1 P-loop containing nucleoside triphosphate hydrolases	8112	2449
3.40.50.720 NAD(P)-binding Rossmann-like Domain	c.2.1 NAD(P)-binding Rossmann-fold domains	10268	2377
3.40.50.970	c.36.1 Thiamin diphosphate-binding fold (THDP-binding)	1456	463
3.40.50.1010 5'-nuclease	c.120.1 PIN domain-like	182	66
3.40.50.1220 TPP-binding domain	c.31.1 DHS-like NAD/FAD-binding domain	734	217
3.40.50.1240 Phosphoglycerate mutase-like	c.60.1 Phosphoglycerate mutase-like	376	103
3.40.50.1380 Methylglyoxal synthase-like domain	c.24.1 Methylglyoxal synthase-like	121	95
3.40.50.1440 Tubulin/FtsZ, GTPase domain	c.32.1 Tubulin nucleotide-binding domain-like	474	58
3.40.50.1460	c.17.1 Caspase-like	467	97
3.40.50.1580	c.56.2 Purine and uridine phosphorylases	1268	350
3.40.50.1700 Glycoside hydrolase family 3 C-terminal domain	c.23.11 Beta-D-glucan exohydrolase, C-terminal domain	119	9
3.40.50.1820	c.69.1 alpha/beta-Hydrolases	3274	975
3.40.50.2020	c.61.1 PRTase-like	689	282
3.40.109.10 NADH Oxidase	d.90.1 FMN-dependent nitroreductase-like	285	74
3.40.140.10 Cytidine Deaminase, domain 2	c.97.1 Cytidine deaminase-like	332	116
3.40.250.10 Rhodanese-like domain	c.46.1 Rhodanese/Cell cycle control phosphatase	232	59
3.40.470.10 Uracil-DNA glycosylase-like domain	c.18.1 Uracil-DNA glycosylase-like	233	59
3.40.525.10 CRAL-TRIO lipid binding domain	c.13.1 CRAL/TRIO domain	53	11
3.40.630.10 Zn peptidases	c.56.5 Zn-dependent exopeptidases	1085	286
3.40.630.30	d.108.1 Acyl-CoA N-acyltransferases (Nat)	1150	300
3.40.710.10 DD-peptidase/beta-lactamase superfamily	e.3.1 beta-lactamase/transpeptidase-like	1717	414
3.40.720.10 Alkaline Phosphatase, subunit A	c.76.1 Alkaline phosphatase-like	387	96
3.40.1050.10 Carbonic anhydrase	c.53.2 beta-carbonic anhydrase, cab	188	27
3.40.1160.10 Acetylglutamate kinase-like	c.73.1 Carbamate kinase-like	349	77
3.40.1190.20	c.72.1 Ribokinase-like	613	129
3.40.1280.10	c.116.1 alpha/beta knot	223	65
3.40.1380.20 Pyruvate kinase, C-terminal domain	c.49.1 PK C-terminal domain-like	329	101
3.40.1520.10 Ta1353-like	d.256.1 Ta1353-like	26	7
3.40.1690.10 secretion proteins EscU	d.367.1 EscU C-terminal domain-like	31	10
3.40.1810.10 Transcription factor, MADS-box	d.88.1 SRF-like	40	22
3.55.30.10 Hsp33 domain	d.193.1 Hsp33 domain	7	6
3.60.15.10 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	d.157.1 Metallo-hydrolase/oxidoreductase	692	141
3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases)	8328	820
3.60.21.10	d.159.1 Metallo-dependent phosphatases	397	158
3.75.10.10 L-arginine/glycine Amidinotransferase; Chain A	d.126.1 Pentein	171	88
3.90.79.10 Nucleoside Triphosphate Pyrophosphohydrolase	d.113.1 Nudix	561	150
3.90.110.10 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	d.162.1 LDH C-terminal domain-like	751	213
3.90.190.10 Protein tyrosine phosphatase superfamily	c.45.1 (Phosphotyrosine protein) phosphatases II	709	189
3.90.226.10 2-enoyl-CoA Hydratase; Chain A, domain 1	c.14.1 ClpP/crotonase	1934	405
3.90.230.10 Creatinase/methionine aminopeptidase superfamily	d.127.1 Creatinase/aminopeptidase	323	121
3.90.470.20 4'-phosphopantetheinyl transferase domain	d.150.1 4'-phosphopantetheinyl transferase	160	21
3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	c.68.1 Nucleotide-diphospho-sugar transferases	1150	415
3.90.700.10 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	d.168.1 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	188	60
3.90.780.10 5'-Nucleotidase, C-terminal domain	d.114.1 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain	42	18
3.90.850.10 Fumarylacetoacetase-like, C-terminal domain	d.177.1 FAH	139	43
3.90.930.12 Ribosomal protein L6, alpha-beta domain	d.141.1 Ribosomal protein L6	765	179
3.90.1170.10 Ribosomal protein L10e/L16	d.41.4 Ribosomal protein L16p/L10e	385	101
3.90.1170.50 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	d.41.1 CO dehydrogenase molybdoprotein N-domain-like	106	43
3.90.1260.10 Argininosuccinate synthetase, chain A, domain 2	d.210.1 Argininosuccinate synthetase, C-terminal domain	42	36
4.10.60.10 Zinc finger, CCHC-type	g.40.1 Retrovirus zinc finger-like domains	34	25
4.10.240.10 Zn(2)-C6 fungal-type DNA-binding domain	g.38.1 Zn2/Cys6 DNA-binding domain	35	27
4.10.410.10 Pancreatic trypsin inhibitor Kunitz domain	g.8.1 BPTI-like	315	164
4.10.800.10 Thyroglobulin type-1	g.28.1 Thyroglobulin type-1 domain	10	7
4.10.1100.10 Transcription factor, SBP-box domain	g.72.1 SBT domain	3	3
4.10.1110.10 AN1-like Zinc finger	g.80.1 AN1-like Zinc finger	7	6

Bronze standard consensus indicates a pair of SCOP and CATH superfamilies that are more similar to each other than to any other superfamily but that may have substantial differences in approaches to domain boundary assignment and/or homology detection.

Download all "bronze" entries as: csv | json

CATH Superfamily	SCOP Superfamily	# CATH domains	# SCOP domains
1.10.8.10 DNA helicase RuvA subunit, C-terminal domain	a.5.2 UBA-like	315	83
1.10.8.50	a.156.1 S13-like H2TH domain	516	118
1.10.8.210 Sirohaem synthase, dimerisation domain	e.37.1 Siroheme synthase middle domains-like	6	9
1.10.8.340 PG0816-like	a.258.1 PG0816-like	1	1
1.10.10.10 Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	a.4.5 "Winged helix" DNA-binding domain	3160	762
1.10.10.190	g.58.1 Pheromone ER-23	2	1
1.10.10.350	a.97.1 An anticodon-binding domain of class I aminoacyl-tRNA synthetases	38	20
1.10.10.370	d.203.1 DsrC, the gamma subunit of dissimilatory sulfite reductase	14	3
1.10.10.670 photosystem ii from thermosynechococcus elongatus	f.55.1 Photosystem II antenna protein-like	47	2
1.10.10.740 Crisp domain	g.19.1 Crisp domain-like	25	5
1.10.10.810	d.198.4 YdhG-like	5	4
1.10.10.1070	a.270.1 Hermes dimerisation domain	6	2
1.10.10.1770	a.261.1 GUN4-like	5	3
1.10.10.2830	a.4.14 KorB DNA-binding domain-like	19	12
1.10.20.60	a.137.12 Glu-tRNAGln amidotransferase C subunit	39	5
1.10.40.60 EpsJ-like	a.60.16 GspK insert domain-like	2	2
1.10.60.30 PSPTO4464-like domains	a.290.1 PSPTO4464-like	2	1
1.10.101.10 PGBD-like superfamily/PGBD	a.20.1 PGBD-like	27	14
1.10.132.20	d.67.3 Ribosome recycling factor, RRF	43	21
1.10.132.50	f.40.1 V-type ATP synthase subunit C	4	4
1.10.150.80	a.60.8 HRDC-like	40	22
1.10.150.90	a.61.1 Retroviral matrix proteins	34	30
1.10.150.280 AF1531-like domain	e.71.1 AF1531-like	2	1
1.10.150.370	a.226.1 Her-1	2	2
1.10.167.10 Regulator of G-protein Signalling 4, domain 2	a.91.1 Regulator of G-protein signaling, RGS	68	23
1.10.220.10 Annexin	a.65.1 Annexin	405	68
1.10.220.30	a.118.14 FliG	27	3
1.10.220.50 Bacteriophage T4, Gp59, helicase assembly protein, C-terminal domain	a.120.1 gene 59 helicase assembly protein	1	1
1.10.238.10 EF-hand	a.39.1 EF-hand	1838	675
1.10.238.100 YAP1 redox domain. Chain B	g.78.1 YAP1 redox domain	1	1
1.10.246.10	a.126.1 Serum albumin-like	1032	185
1.10.246.90	a.183.1 Nop domain	41	3
1.10.250.10 Bluetongue Virus 10, subunit 1, domain 1	a.115.1 A virus capsid protein alpha-helical domain	19	33
1.10.268.10 Topoisomerase, domain 3	e.11.1 Type II DNA topoisomerase	65	6
1.10.269.10 Adenovirus DNA-binding, N-terminal domain	a.54.1 Domain of early E2A DNA-binding protein, ADDBP	8	6
1.10.287.40	a.2.7 tRNA-binding arm	41	17
1.10.287.70	f.14.1 Voltage-gated potassium channels	577	75
1.10.287.80	c.49.2 ATP synthase (F1-ATPase), gamma subunit	116	17
1.10.287.160 HR1 repeat	a.2.13 Transcriptional repressor TraM	24	6
1.10.287.190	a.32.1 Transcription factor IIA (TFIIA), alpha-helical domain	7	7
1.10.287.310	a.2.2 Ribosomal protein L29 (L29p)	138	89
1.10.287.660 Helix hairpin bin	a.30.5 Hypothetical protein D-63	41	4
1.10.287.850 HP0062-like domain	a.25.4 PE/PPE dimer-like	43	4
1.10.287.880 Hypothetical protein YfhH domain	b.34.15 Hypothetical protein YfhH	2	1
1.10.287.990 Fe,Mn superoxide dismutase (SOD) domain	a.2.11 Fe,Mn superoxide dismutase (SOD), N-terminal domain	305	222
1.10.287.1050 H-NS histone-like proteins	a.155.1 H-NS histone-like proteins	12	8
1.10.287.1060 ESAT-6-like	a.30.8 FHV B2 protein-like	83	6
1.10.287.1100 Sporulation inhibitor A	a.2.12 Sporulation inhibitor Sda	2	1
1.10.287.1140 EspA/CesA-like	a.231.1 EspA/CesA-like	1	2
1.10.287.1160 Anti-sigma-28 factor FlgM	a.137.11 Anti-sigma factor FlgM	5	5
1.10.290.10 Topoisomerase I, domain 4	e.10.1 Prokaryotic type I DNA topoisomerase	44	19
1.10.340.30 Hypothetical protein; domain 2	a.96.1 DNA-glycosylase	186	96
1.10.418.10 Calponin-like domain	a.40.1 Calponin-homology domain, CH-domain	203	43
1.10.472.10 Cyclin-like	a.74.1 Cyclin-like	711	329
1.10.472.80	a.69.2 Ypt/Rab-GAP domain of gyp1p	26	4
1.10.489.10 Chloroperoxidase-like	a.39.3 Cloroperoxidase	19	26
1.10.510.10 Transferase(Phosphotransferase) domain 1	d.144.1 Protein kinase-like (PK-like)	5906	808
1.10.510.50	d.143.1 SAICAR synthase-like	23	18
1.10.520.10	a.93.1 Heme-dependent peroxidases	768	382
1.10.530.10	d.2.1 Lysozyme-like	1347	1173
1.10.579.10 DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3	a.99.1 Cryptochrome/photolyase FAD-binding domain	81	21
1.10.580.10 Citrate Synthase, domain 1	a.103.1 Citrate synthase	118	42
1.10.599.10 Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3	a.110.1 Aldehyde ferredoxin oxidoreductase, C-terminal domains	10	10
1.10.606.10 Vanadium-containing Chloroperoxidase, domain 2	a.111.1 Acid phosphatase/Vanadium-dependent haloperoxidase	29	31
1.10.720.10	a.140.4 Recombination endonuclease VII, C-terminal and dimerization domains	19	10
1.10.720.30 SAP domain	a.140.2 SAP domain	16	9
1.10.840.10 Ras guanine-nucleotide exchange factors catalytic domain	a.117.1 Ras GEF	45	11
1.10.860.10 DNAb Helicase; Chain A	a.81.1 N-terminal domain of DnaB helicase	65	5
1.10.1000.11 Arf Nucleotide-binding Site Opener,domain 2	a.118.3 Sec7 domain	39	17
1.10.1040.10 N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like	340	130
1.10.1130.10 Flavocytochrome C3; Chain A	a.138.1 Multiheme cytochromes	149	140
1.10.1140.10 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3	a.69.1 C-terminal domain of alpha and beta subunits of F1 ATP synthase	251	94
1.10.1200.30	a.28.3 Retrovirus capsid dimerization domain-like	166	17
1.10.1200.60	a.94.1 Ribosomal protein L19 (L19e)	66	58
1.10.1220.10 Met repressor-like	a.43.1 Ribbon-helix-helix	193	149
1.10.1300.10 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain	a.211.1 HD-domain/PDEase-like	571	193
1.10.1410.30	a.160.1 PAP/OAS1 substrate-binding domain	68	50
1.10.1420.10	a.113.1 DNA repair protein MutS, domain III	98	25
1.10.1510.20	a.23.2 Diol dehydratase, gamma subunit	20	18
1.10.1630.10 Nuclear receptor coactivator, CREB-bp-like, interlocking domain	a.153.1 Nuclear receptor coactivator interlocking domain	11	7
1.10.1660.10	a.6.1 Putative DNA-binding domain	76	60
1.10.1740.10	a.69.3 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain	184	29
1.10.1790.10 PRD domain	a.142.1 PTS-regulatory domain, PRD	7	4
1.10.1820.10 protein kinase ck2 holoenzyme, chain C, domain 1	g.41.4 Casein kinase II beta subunit	36	16
1.10.1900.10 c-terminal domain of poly(a) binding protein	a.144.1 PABC (PABP) domain	39	6
1.10.1900.20 Ribosomal protein L20	a.144.2 Ribosomal protein L20	6	51
1.10.3040.10 borna disease virus nucleoprotein, domain 1	a.206.1 P40 nucleoprotein	2	2
1.10.3060.10 Helical scaffold and wing domains of SecA	a.172.1 Helical scaffold and wing domains of SecA	14	8
1.10.3090.10 cca-adding enzyme, domain 2	a.173.1 Poly A polymerase C-terminal region-like	30	10
1.10.3120.10 Trigger factor, C-terminal domain	a.223.1 Triger factor/SurA peptide-binding domain-like	14	11
1.10.3190.10 yfbu gene product, domain 2	a.233.1 YfbU-like	32	16
1.10.3290.20	e.45.1 Antivirulence factor	4	4
1.10.3380.30	a.289.1 Sec63 N-terminal domain-like	12	3
1.10.3480.10 TorD-like	a.184.1 TorD-like	22	7
1.10.3500.10 Tex N-terminal region-like	a.294.1 Tex N-terminal region-like	5	3
1.10.3530.10 Api92-like	e.66.1 Api92-like	1	1
1.10.3580.10 ATP12 ATPase	d.381.1 ATP12-like	7	7
1.10.3610.10 Nucleoprotein	a.260.1 Rhabdovirus nucleoprotein-like	72	27
1.10.3900.10 YacF-like	e.68.1 YacF-like	7	2
1.10.3970.10 BSD domain	a.240.1 BSD domain-like	1	2
1.10.4100.10 2-methylcitrate dehydratase PrpD	e.44.1 2-methylcitrate dehydratase PrpD	6	2
1.20.5.50	d.244.1 Cell division protein ZapA-like	182	6
1.20.5.220	f.23.15 Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	37	16
1.20.5.250	f.3.1 Light-harvesting complex subunits	74	47
1.20.5.270 Ubiquinol cytochrome reductase, transmembrane domain	f.23.12 ISP transmembrane anchor	66	36
1.20.5.420 Immunoglobulin FC, subunit C	a.8.1 Bacterial immunoglobulin/albumin-binding domains	219	29
1.20.5.440 ATP synthase delta/epsilon subunit, C-terminal domain	a.2.10 Epsilon subunit of F1F0-ATP synthase C-terminal domain	42	8
1.20.5.860 Photosystem II cytochrome b559, alpha subunit	f.23.38 Cytochrome b559 subunits	47	2
1.20.5.880 Photosystem II reaction center protein H	f.23.33 Photosystem II 10 kDa phosphoprotein PsbH	45	1
1.20.5.1130 Connexin43	f.50.1 Connexin43	1	1
1.20.5.1140 Docking domain of the erythromycin polyketide synthase (DEBS)	a.34.3 Docking domain A of the erythromycin polyketide synthase (DEBS)	2	2
1.20.50.10 Pheromone ER-1	a.10.1 Protozoan pheromone proteins	3	6
1.20.58.60	a.7.1 Spectrin repeat	56	30
1.20.58.70	a.47.2 t-snare proteins	26	12
1.20.58.90	a.30.6 HP1531-like	64	6
1.20.58.100 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain	a.7.3 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	134	31
1.20.58.160	a.7.8 GAT-like domain	15	19
1.20.58.190 Translin; domain 1	a.118.16 Translin	50	8
1.20.58.220 Phosphate transport system protein phou homolog 2; domain 2	a.7.12 PhoU-like	36	14
1.20.58.280 Hypothetical protein 1500032h18.	a.7.14 MIT domain	118	7
1.20.58.470	a.252.1 Mediator hinge subcomplex-like	3	6
1.20.58.500	a.246.2 TTHA0068-like	3	4
1.20.58.550	e.34.1 NSP3 homodimer	8	8
1.20.58.580	a.137.10 Stathmin	59	5
1.20.58.610	a.205.1 Hsp90 co-chaperone CDC37	3	1
1.20.58.1030	a.278.1 GINS helical bundle-like	16	26
1.20.58.1990	f.45.1 Mitochondrial ATP synthase coupling factor 6	3	3
1.20.58.2220	a.207.1 Formin homology 2 domain (FH2 domain)	25	8
1.20.59.10 Chorismate mutase	a.130.1 Chorismate mutase II	36	30
1.20.85.10 Photosystem II protein D1-like	f.26.1 Bacterial photosystem II reaction centre, L and M subunits	508	174
1.20.91.10	a.95.1 Influenza virus matrix protein M1	47	4
1.20.120.80	f.25.1 Cytochrome c oxidase subunit III-like	71	35
1.20.120.230 Alpha-catenin/vinculin-like	a.24.9 alpha-catenin/vinculin-like	133	32
1.20.120.330 Nucleotidyltransferases domain 2	a.24.14 FAT domain of focal adhesion kinase	139	21
1.20.120.340 Flagellar protein FliS	a.24.19 Flagellar export chaperone FliS	10	7
1.20.120.390 Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1	a.202.1 Superantigen MAM	8	6
1.20.120.510 mg296 homolog like	a.291.1 MG296-like	3	3
1.20.120.730	a.71.2 Helical domain of Sec23/24	34	8
1.20.120.760	a.8.6 Staphylocoagulase	6	8
1.20.120.1150	a.268.1 PTPA-like	23	20
1.20.120.1810	a.177.1 Sigma2 domain of RNA polymerase sigma factors	52	30
1.20.140.80	e.63.1 E2F-DP heterodimerization region	1	2
1.20.140.180	a.296.1 PMT central region-like	4	4
1.20.190.40	e.58.1 Viral ssDNA binding protein	2	2
1.20.200.10 Fumarase/aspartase (Central domain)	a.127.1 L-aspartase-like	360	102
1.20.245.10 Lipoxygenase-1; Domain 5	a.119.1 Lipoxigenase	73	27
1.20.810.10 Cytochrome Bc1 Complex; Chain C	f.21.1 Transmembrane di-heme cytochromes	117	45
1.20.920.50	a.101.1 Uteroglobin-like	6	18
1.20.930.10 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	a.48.4 HIV integrase-binding domain	41	3
1.20.950.20 Transmembrane di-heme cytochromes, Chain C	f.21.3 Respiratory nitrate reductase 1 gamma chain	14	6
1.20.970.10 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain	177	40
1.20.970.30	a.210.1 Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain	1	1
1.20.1050.20	a.47.1 STAT	10	4
1.20.1050.80	a.222.1 VPS9 domain	12	2
1.20.1060.20	d.215.1 Smc hinge domain	4	10
1.20.1090.10 Dehydroquinate synthase-like - alpha domain	e.22.1 Dehydroquinate synthase-like	152	45
1.20.1250.20 MFS general substrate transporter like domains	f.38.1 MFS general substrate transporter	122	7
1.20.1260.10	a.25.1 Ferritin-like	2614	857
1.20.1260.120	a.29.13 Bacillus cereus metalloprotein-like	26	52
1.20.1270.10	a.8.4 Heat shock protein 70kD (HSP70), C-terminal subdomain	122	9
1.20.1270.230	a.263.1 DNA terminal protein	6	6
1.20.1280.20 HscB, C-terminal domain	a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain	20	3
1.20.1280.30	a.23.3 Methane monooxygenase hydrolase, gamma subunit	58	54
1.20.1280.80	a.243.1 Type III secretion system domain	2	6
1.20.1280.170	a.118.17 Cullin repeat-like	9	6
1.20.1310.20	a.264.1 Duffy binding domain-like	19	7
1.20.1330.10 f41 fragment of flagellin, N-terminal domain	e.32.1 Phase 1 flagellin	17	2
1.20.1370.10 Hemocyanin, N-terminal domain	a.85.1 Hemocyanin, N-terminal domain	10	11
1.20.1440.50 Ta0600-like	a.29.14 Ta0600-like	11	5
1.20.1440.120	g.45.1 ArfGap/RecO-like zinc finger	9	3
1.20.1440.200	a.2.17 Endosomal sorting complex assembly domain	7	15
1.20.1460.10 subunit c (vma5p) of the yeast v-atpase, domain 2	e.57.1 Vacuolar ATP synthase subunit C	1	1
1.20.1480.10 hypothetical protein mp506/mpn330, domain 1	a.234.1 Hypothetical protein MPN330	1	1
1.20.1560.10 ABC transporter type 1, transmembrane domain	f.37.1 ABC transporter transmembrane region	65	20
1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain	f.35.1 Multidrug efflux transporter AcrB transmembrane domain	294	12
1.25.10.10 Leucine-rich Repeat Variant	a.118.1 ARM repeat	606	210
1.25.40.10	a.118.8 TPR-like	721	121
1.25.40.20 Ankyrin repeat-containing domain	d.211.1 Ankyrin repeat	480	51
1.40.10.10 Peridinin-chlorophyll A binding	a.131.1 Peridinin-chlorophyll protein	12	6
2.10.22.10 Antistasin; domain 1	g.3.15 Leech antihemostatic proteins	15	26
2.10.50.10 Tumor Necrosis Factor Receptor, subunit A, domain 2	g.24.1 TNF receptor-like	207	111
2.10.70.10 Complement Module, domain 1	g.18.1 Complement control module/SCR domain	524	215
2.10.80.10 Lipase, subunit A	g.3.10 Colipase-like	14	16
2.10.210.10 Cytochrome Bc1 Complex; Chain I	d.184.1 Non-globular alpha+beta subunits of globular proteins	46	24
2.10.220.10 Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2	g.3.9 Growth factor receptor domain	142	43
2.20.25.10	g.41.3 Zinc beta-ribbon	353	65
2.20.25.30	g.41.8 Zn-binding ribosomal proteins	186	209
2.20.25.290	d.353.1 AMPKBI-like	17	17
2.20.28.10	g.41.5 Rubredoxin-like	197	132
2.20.28.40 H/ACA ribonucleoprotein complex, subunit Nop10	g.41.16 Nop10-like SnoRNP	17	8
2.20.28.140	g.41.11 Ran binding protein zinc finger-like	17	9
2.20.70.10	b.72.1 WW domain	107	43
2.20.90.10 Vitellinogen, beta-sheet shell domain	f.7.1 Lipovitellin-phosvitin complex; beta-sheet shell regions	1	3
2.20.100.10 Thrombospondin type-1 (TSP1) repeat	g.60.1 TSP-1 type 1 repeat	19	2
2.20.140.10 WGR domain	d.297.1 WGR domain-like	11	1
2.30.27.10 Phage FD Coat Protein,Membrane penetration domain	b.37.1 N-terminal domains of the minor coat protein g3p	14	8
2.30.29.130	e.76.1 Viral glycoprotein ectodomain-like	11	7
2.30.30.30	b.34.5 Translation proteins SH3-like domain	582	254
2.30.30.50	b.34.4 Electron transport accessory proteins	153	44
2.30.30.140	b.34.9 Tudor/PWWP/MBT	584	94
2.30.30.290 YopX-like domains	b.172.1 YopX-like	6	8
2.30.30.360 Myosin S1 fragment, N-terminal	b.34.3 Myosin S1 fragment, N-terminal domain	43	51
2.30.30.380 Zn-finger domain of Sec23/24	g.41.10 Zn-finger domain of Sec23/24	36	8
2.30.30.460	g.70.1 Necrosis inducing protein 1, NIP1	1	1
2.30.30.470	b.120.1 Tp47 lipoprotein, N-terminal domain	2	2
2.30.30.840	b.34.18 CarD-like	11	2
2.30.30.1100	b.76.2 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	36	14
2.30.31.10 Transcriptional Coactivator Pc4; Chain A	d.18.1 ssDNA-binding transcriptional regulator domain	49	34
2.30.42.20	d.292.1 DNA mismatch repair protein MutL	13	2
2.30.90.10 Heparin-binding Growth Factor, Midkine; Chain A- C-terminal Domain	g.5.1 Midkine	2	2
2.30.130.10 PUA domain	b.122.1 PUA domain-like	70	138
2.30.170.40 Ribosomal protein L28/L24	d.325.1 L28p-like	71	42
2.30.300.10 Baseplate protein-like domain - beta roll fold	b.106.1 Phage tail proteins	9	28
2.40.10.10 Trypsin-like serine proteases	b.47.1 Trypsin-like serine proteases	6310	1450
2.40.10.170	b.49.1 N-terminal domain of alpha and beta subunits of F1 ATP synthase	237	94
2.40.10.220 predicted glycosyltransferase like domains	b.45.2 PilZ domain-like	44	7
2.40.10.290	d.302.1 Coronavirus NSP8-like	6	3
2.40.20.10 Plasminogen Kringle 4	g.14.1 Kringle-like	169	118
2.40.30.10 Translation factors	b.43.3 Translation proteins	997	239
2.40.30.70 YaeB-like	e.56.1 YaeB-like	6	2
2.40.30.170	f.46.1 HlyD-like secretion proteins	87	26
2.40.40.10 RlpA-like domain	b.52.1 Barwin-like endoglucanases	74	23
2.40.40.20	b.52.2 ADC-like	372	135
2.40.50.40	d.9.1 Interleukin 8-like chemokines	608	173
2.40.50.100	b.40.6 MOP-like	560	115
2.40.50.110	b.40.2 Bacterial enterotoxins	690	590
2.40.50.120	b.40.3 TIMP-like	75	19
2.40.50.180 CheA-289, Domain 4	b.40.7 CheW-like	10	7
2.40.50.260 Nucleic acid-binding protein domain	b.40.8 gp5 N-terminal domain-like	3	2
2.40.50.420	b.40.11 TM0957-like	4	4
2.40.50.530	d.301.1 L35p-like	173	42
2.40.70.10 Acid Proteases	b.50.1 Acid proteases	4536	840
2.40.110.10 Butyryl-CoA Dehydrogenase, subunit A, domain 2	e.6.1 Acyl-CoA dehydrogenase NM domain-like	365	82
2.40.128.50	b.61.3 D-aminopeptidase, middle and C-terminal domains	4	2
2.40.128.90 OMPT-like	f.4.4 OMPT-like	9	4
2.40.128.620	b.61.7 Extracellular hemoglobin linker subunit, receptor domain	12	3
2.40.160.10 Porin	f.4.3 Porins	230	101
2.40.160.80	e.43.1 Subunits of heterodimeric actin filament capping protein Capz	66	4
2.40.160.120	d.338.1 Oxysterol-binding protein-like	11	8
2.40.180.10 Catalase core domain	e.5.1 Heme-dependent catalase-like	336	138
2.40.240.10 Ribosomal Protein L25; Chain P	b.53.1 Ribosomal protein L25-like	319	71
2.40.270.10 DNA-directed RNA polymerase, subunit 2, domain 6	e.29.1 beta and beta-prime subunits of DNA dependent RNA-polymerase	173	115
2.40.290.10	b.131.1 SPOC domain-like	6	5
2.40.320.10 Hypothetical Protein Pfu-838710-001	d.63.1 CYTH-like phosphatases	61	13
2.40.330.20	b.129.1 AbrB/MazE/MraZ-like	18	29
2.40.370.10 AttH-like domain	b.176.1 AttH-like	4	2
2.40.430.10 D-maltodextrin-binding protein, MBP	e.70.1 MalF N-terminal region-like	12	1
2.40.490.10 Newcastle disease virus like domain	f.12.1 Head and neck region of the ectodomain of NDV fusion glycoprotein	20	6
2.40.500.10 Upper collar protein gp10 (connector protein)	e.27.1 Upper collar protein gp10 (connector protein)	39	39
2.60.15.10 F0F1 ATP synthase delta/epsilon subunit, N-terminal	b.93.1 Epsilon subunit of F1F0-ATP synthase N-terminal domain	32	9
2.60.20.10 Crystallins	b.11.1 gamma-Crystallin-like	183	77
2.60.40.10 Immunoglobulins	b.1.1 Immunoglobulin	26653	5565
2.60.40.420 Cupredoxins - blue copper proteins	b.6.1 Cupredoxins	2235	898
2.60.40.680	b.2.2 Carbohydrate-binding domain	88	53
2.60.40.720	b.2.5 p53-like transcription factors	347	156
2.60.40.780 von Hippel-Lindau disease tumour suppressor, beta domain	b.3.3 VHL	92	6
2.60.40.1090 Fimbrial-type adhesion domain	b.2.3 Bacterial adhesins	218	140
2.60.40.1130 Rab geranylgeranyltransferase alpha-subunit, insert domain	b.7.4 Rab geranylgeranyltransferase alpha-subunit, insert domain	26	3
2.60.40.1170	b.2.7 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	48	7
2.60.40.1210	b.1.9 CBD9-like	10	13
2.60.40.1230	b.1.10 Clathrin adaptor appendage domain	46	38
2.60.40.1300	b.1.20 Tp47 lipoprotein, middle and C-terminal domains	2	4
2.60.40.1330	b.116.1 Viral chemokine binding protein m3	8	8
2.60.40.1510 ntegrin, alpha v. Chain A, domain 3	b.1.15 Integrin domains	129	19
2.60.40.1670 beta-sandwich domain of Sec23/24	b.2.8 beta-sandwich domain of Sec23/24	34	8
2.60.40.1680 4-oxalocrotonate tautomerase-like	b.32.1 gp9	4	22
2.60.40.1890	b.2.10 DR1885-like metal-binding protein	9	2
2.60.98.10 Tick-borne Encephalitis virus Glycoprotein, domain 1	f.10.1 Viral glycoprotein, central and dimerisation domains	81	27
2.60.98.20 Flagellar hook protein FlgE	b.152.1 Flagellar hook protein flgE	2	2
2.60.120.10 Jelly Rolls	b.82.1 RmlC-like cupins	1543	321
2.60.120.230	b.121.1 PHM/PNGase F	40	22
2.60.120.240 Protective antigen, heptamerisation domain	f.11.1 Anthrax protective antigen	43	16
2.60.120.330 B-lactam Antibiotic, Isopenicillin N Synthase; Chain	b.82.2 Clavaminate synthase-like	99	155
2.60.120.380	b.23.2 Collagen-binding domain	48	6
2.60.120.420 Membrane penetration protein mu1, Chain B, domain 4	e.35.1 Membrane penetration protein mu1	13	3
2.60.120.580 Acetamidase/Formamidase-like domains	b.23.3 Acetamidase/Formamidase-like	4	4
2.60.120.600 Domain of unknown function DUF1214, C-terminal domain	e.65.1 VPA0735-like	6	2
2.60.200.20	b.26.1 SMAD/FHA domain	142	73
2.60.260.20 Urease metallochaperone UreE, N-terminal domain	b.107.1 Urease metallochaperone UreE, N-terminal domain	90	12
2.60.340.10 baseplate structural protein gp8, domain 1	b.127.1 Baseplate structural protein gp8	14	12
2.60.520.10 Phage fibre proteins	b.163.1 Bacteriophage trimeric proteins domain	41	19
2.70.98.10	b.30.5 Galactose mutarotase-like	513	324
2.70.150.10 Calcium-transporting ATPase, cytoplasmic transduction domain A	b.82.7 Calcium ATPase, transduction domain A	118	22
2.70.250.10 receptor-binding protein prd1-p2, domain 3	b.126.1 Adsorption protein p2	2	2
2.80.10.50	b.42.1 Cytokine	1378	154
2.90.10.10 Bulb-type lectin domain	b.78.1 alpha-D-mannose-specific plant lectins	115	35
2.120.10.30 TolB, C-terminal domain	b.68.6 Calcium-dependent phosphotriesterase	219	31
2.130.10.10 YVTN repeat-like/Quinoprotein amine dehydrogenase	b.69.4 WD40 repeat-like	1077	76
2.130.10.150 Peptidase/esterase 'gauge' domain	b.69.7 Peptidase/esterase 'gauge' domain	34	30
2.160.20.70	b.80.5 C-terminal domain of adenylylcyclase associated protein	22	8
2.170.11.10 DNA Topoisomerase I, domain 2	e.15.1 Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	17	16
2.170.15.10 Proaerolysin, chain A, domain 3	f.8.1 Aerolisin/ETX pore-forming domain	26	13
2.170.30.10 Parvovirus coat protein VP1/VP2	b.121.5 ssDNA viruses	165	30
2.170.150.10 Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A	b.88.1 Mss4-like	21	24
2.170.180.11 Methuselah ectodomain, domain 2	b.102.1 Methuselah ectodomain	6	6
2.170.190.11 Molybdopterin biosynthesis moea protein, domain 3.	b.103.1 MoeA N-terminal region -like	55	40
2.170.200.10	b.91.1 E2 regulatory, transactivation domain	13	11
2.170.260.10 paz domain	b.34.14 PAZ domain	69	18
2.170.270.10 SET domain	b.85.7 SET domain	241	44
3.10.20.30	d.15.4 2Fe-2S ferredoxin-like	503	167
3.10.20.180	d.15.5 Staphylokinase/streptokinase	14	26
3.10.20.400	b.168.1 HisI-like	2	2
3.10.25.10 Formyl transferase, C-terminal domain	b.46.1 FMT C-terminal domain-like	32	21
3.10.28.10 Homing endonucleases	d.95.2 Homing endonucleases	301	69
3.10.100.10 Mannose-Binding Protein A, subunit A	d.169.1 C-type lectin-like	835	485
3.10.196.10 Vitamin B12-dependent methionine synthase, activation domain	d.173.1 Methionine synthase activation domain-like	8	6
3.10.270.10 Urate Oxidase;	d.96.1 Tetrahydrobiopterin biosynthesis enzymes-like	196	409
3.10.290.10 RNA-binding S4 domain	d.66.1 Alpha-L RNA-binding motif	359	86
3.10.310.10 Diaminopimelate Epimerase; Chain A, domain 1	d.21.1 Diaminopimelate epimerase-like	189	54
3.10.360.10 Antimicrobial Peptide, Beta-defensin 2; Chain A	g.9.1 Defensin-like	24	62
3.10.440.10	d.29.1 Ribosomal protein L31e	118	40
3.10.450.10	d.17.1 Cystatin/monellin	163	70
3.10.450.40	d.17.2 Amine oxidase N-terminal region	512	234
3.10.450.90	d.17.6 Pre-PUA domain	9	15
3.10.510.20	d.350.1 YcgL-like	1	1
3.10.580.10 CBS-domain	d.37.1 CBS-domain pair	221	62
3.15.20.10 Bactericidal permeability-increasing protein; domain 2	d.83.1 Bactericidal permeability-increasing protein, BPI	7	4
3.20.10.10 D-amino Acid Aminotransferase, subunit A, domain 2	e.17.1 D-aminoacid aminotransferase-like PLP-dependent enzymes	247	51
3.20.14.10 L-fucose/L-arabinose isomerase, C-terminal	b.43.2 FucI/AraA C-terminal domain-like	21	12
3.20.20.70 Aldolase class I	c.1.10 Aldolase	5451	604
3.20.20.210	c.1.22 UROD/MetE-like	109	20
3.20.20.240	c.1.19 Cobalamin (vitamin B12)-dependent enzymes	43	55
3.20.20.360 Malate synthase, domain 3	c.1.13 Malate synthase G	51	10
3.20.90.10 Tubby Protein; Chain A	d.23.1 Tubby C-terminal domain-like	7	4
3.20.110.10 Glycoside hydrolase 38, N terminal domain	c.6.2 Glycoside hydrolase/deacetylase	67	84
3.30.9.10 D-Amino Acid Oxidase, subunit A, domain 2	d.16.1 FAD-linked reductases, C-terminal domain	284	319
3.30.30.50 Translation initiation factor 2 beta, aIF2beta, N-terminal domain	d.241.1 Translation initiation factor 2 beta, aIF2beta, N-terminal domain	2	2
3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)	g.44.1 RING/U-box	605	50
3.30.40.200	g.43.1 B-box zinc-binding domain	15	8
3.30.44.10 Smk Toxin, beta chain	d.70.1 Yeast killer toxins	4	6
3.30.50.10 Erythroid Transcription Factor GATA-1, subunit A	g.39.1 Glucocorticoid receptor-like (DNA-binding domain)	235	367
3.30.60.10 Endochitinase-like	g.3.1 Plant lectins/antimicrobial peptides	160	108
3.30.60.30	g.68.1 Kazal-type serine protease inhibitors	177	79
3.30.60.180	g.85.1 HIT/MYND zinc finger-like	20	6
3.30.70.20	d.58.1 4Fe-4S ferredoxins	378	198
3.30.70.100	d.58.4 Dimeric alpha+beta barrel	620	177
3.30.70.240	d.58.11 EF-G C-terminal domain-like	98	68
3.30.70.260	d.58.18 ACT-like	290	138
3.30.70.270	e.8.1 DNA/RNA polymerases	2463	622
3.30.70.330	d.58.7 RNA-binding domain, RBD	1375	275
3.30.70.340 Metallocarboxypeptidase-like	d.58.3 Protease propeptides/inhibitors	35	17
3.30.70.470	d.58.31 Methyl-coenzyme M reductase subunits	90	42
3.30.70.520	d.58.33 Formylmethanofuran:tetrahydromethanopterin formyltransferase	48	48
3.30.70.590	d.58.16 PAP/Archaeal CCA-adding enzyme, C-terminal domain	81	46
3.30.70.930	d.58.48 MTH1187/YkoF-like	43	22
3.30.70.980	e.39.1 YebC-like	8	3
3.30.70.990 YajQ-like, domain 2	d.58.49 YajQ-like	4	4
3.30.70.1200 Crispr-associated protein; domain 1	d.58.53 CRISPR-associated protein	22	2
3.30.70.1260 bacterial protein sp0830 like	d.356.1 SP0830-like	4	4
3.30.70.1430 Multidrug efflux transporter AcrB pore domain	d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains	294	24
3.30.70.1650	d.308.1 THUMP domain-like	2	6
3.30.70.1660	e.38.1 Release factor	21	6
3.30.70.1730	d.58.62 Ribosomal protein L10-like	49	3
3.30.70.1840	d.318.1 SARS receptor-binding domain-like	43	9
3.30.70.2050	d.357.1 NosL/MerB-like	2	3
3.30.160.20	d.50.1 dsRNA-binding domain-like	460	137
3.30.160.60 Classic Zinc Finger	g.37.1 beta-beta-alpha zinc fingers	347	182
3.30.160.160 YegP-like	d.348.1 YegP-like	10	14
3.30.160.730	g.91.1 E7 C-terminal domain-like	3	5
3.30.190.20	e.24.1 Ribosomal protein L1	106	23
3.30.190.30	d.311.1 ImmE5-like	2	2
3.30.230.10	d.14.1 Ribosomal protein S5 domain 2-like	1187	510
3.30.300.10	d.130.1 S-adenosylmethionine synthetase	264	81
3.30.300.20	d.52.3 Prokaryotic type KH domain (KH-domain type II)	500	83
3.30.300.50	d.52.1 Alpha-lytic protease prodomain	14	14
3.30.300.90 BolA-like	d.52.6 BolA-like	21	2
3.30.300.160	d.52.10 EspE N-terminal domain-like	7	4
3.30.310.10 TATA-Binding Protein	d.129.1 TATA-box binding protein-like	176	165
3.30.310.120 Rbstp2229 like protein	d.129.8 Rbstp2229 protein	1	1
3.30.365.10 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain	d.133.1 Molybdenum cofactor-binding domain	431	43
3.30.390.100	c.67.3 Dhaf3308-like	4	2
3.30.420.40	c.55.1 Actin-like ATPase domain	2205	649
3.30.420.100	c.55.4 Translational machinery components	329	159
3.30.420.210	d.245.1 NSFL1 (p97 ATPase) cofactor p47, SEP domain	2	2
3.30.428.10 HIT-like	d.13.1 HIT-like	273	103
3.30.450.20	d.110.3 PYP-like sensor domain (PAS domain)	712	106
3.30.450.30 Dynein light chain 2a, cytoplasmic	d.110.1 Profilin (actin-binding protein)	137	33
3.30.450.40	d.110.2 GAF domain-like	306	51
3.30.450.50	d.110.4 SNARE-like	18	12
3.30.457.50	d.300.1 Kinetochore globular domain	9	4
3.30.460.10 Beta Polymerase, domain 2	d.218.1 Nucleotidyltransferase	763	241
3.30.460.20 CorA soluble domain-like	d.328.1 CorA soluble domain-like	76	21
3.30.460.60	e.69.1 Poly(A) polymerase catalytic subunit-like	9	2
3.30.465.10	d.145.1 FAD-binding/transporter-associated domain-like	299	129
3.30.470.20 ATP-grasp fold, B domain	d.142.1 Glutathione synthetase ATP-binding domain-like	676	234
3.30.470.30 DNA ligase/mRNA capping enzyme	d.142.2 DNA ligase/mRNA capping enzyme, catalytic domain	125	29
3.30.479.20 Elongation factor Ts, dimerisation domain	d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain	15	11
3.30.497.10 Antithrombin, subunit I, domain 2	e.1.1 Serpins	342	119
3.30.499.10 Aconitase, domain 3	c.83.1 Aconitase iron-sulfur domain	56	20
3.30.500.10 MHC class I-like antigen recognition-like	d.19.1 MHC antigen-recognition domain	1412	661
3.30.500.20 BH3703-like domains	d.359.1 BH3703-like	4	2
3.30.530.20	d.129.3 Bet v1-like	445	130
3.30.540.10 Fructose-1,6-Bisphosphatase, subunit A, domain 1	e.7.1 Carbohydrate phosphatase	410	151
3.30.559.10 Chloramphenicol acetyltransferase-like domain	c.43.1 CoA-dependent acyltransferases	212	118
3.30.565.30 Sporulation initiation phosphotransferase B (SpoOB), C-terminal domain	d.123.1 Sporulation response regulatory protein Spo0B	10	10
3.30.565.50	d.341.1 Peptidoglycan deacetylase N-terminal noncatalytic region	2	2
3.30.700.20 Hypothetical protein ph0010; domain 1	d.309.1 AMMECR1-like	7	6
3.30.720.50	d.289.1 WWE domain	8	3
3.30.870.10 Endonuclease Chain A	d.136.1 Phospholipase D/nuclease	119	85
3.30.920.10 Frataxin/CyaY	d.82.2 Frataxin/Nqo15-like	34	12
3.30.920.30 Hypothetical protein.	d.50.3 YcfA/nrd intein domain	4	3
3.30.930.20	d.296.1 YktB/PF0168-like	2	2
3.30.950.10 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	c.90.1 Tetrapyrrole methylase	228	41
3.30.960.10 Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A, domain 1	d.91.1 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	11	1
3.30.980.10 Threonyl-trna Synthetase; Chain A, domain 2	d.67.1 ThrRS/AlaRS common domain	32	20
3.30.990.10 Formiminotransferase, N-terminal subdomain	d.58.34 Formiminotransferase domain of formiminotransferase-cyclodeaminase.	6	4
3.30.1030.10 Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2	d.147.1 Methenyltetrahydromethanopterin cyclohydrolase	13	1
3.30.1120.30 POLO box domain	d.223.1 Polo-box domain	157	22
3.30.1120.50 Pepsin inhibitor-3	d.62.1 Pepsin inhibitor-3	4	2
3.30.1120.90	d.305.1 NAP-like	16	5
3.30.1300.30 GSPII I/J protein-like	d.24.1 Pili subunits	32	45
3.30.1330.80 Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2	d.290.1 AF0104/ALDC/Ptd012-like	31	11
3.30.1330.100 CofE-like	d.340.1 CofE-like	4	4
3.30.1330.130	d.81.3 FwdE-like	3	3
3.30.1360.40	d.74.2 C-terminal domain of arginine repressor	154	36
3.30.1360.120 Probable tRNA modification gtpase trme; domain 1	d.250.1 Folate-binding domain	62	16
3.30.1370.30	d.140.1 Ribosomal protein S8	395	61
3.30.1370.60 Hypothetical oxidoreductase yiak; domain 2	c.122.1 L-sulfolactate dehydrogenase-like	58	26
3.30.1370.90	d.239.1 GCM domain	1	1
3.30.1390.20 Ribosomal protein L30, ferredoxin-like fold domain	d.59.1 Ribosomal protein L30p/L7e	328	87
3.30.1450.10	d.98.1 beta-lactamase-inhibitor protein, BLIP	61	8
3.30.1460.20	d.198.2 Arp2/3 complex subunits	60	30
3.30.1460.30 YgaC/TfoX-N like chaperone	d.198.5 YgaC/TfoX-N like	2	3
3.30.1490.120 RNA polymerase Rpb7-like, N-terminal domain	d.230.1 N-terminal, heterodimerisation domain of RBP7 (RpoE)	82	14
3.30.1660.20	g.77.1 Resistin	12	12
3.30.1890.10 FepE-like	d.58.60 Bacterial polysaccharide co-polymerase-like	47	25
3.30.2030.10 YwmB-like	d.129.10 YwmB-like	1	1
3.30.2110.10 CbiD-like	e.54.1 CbiD-like	1	1
3.30.2280.10 Hypothetical protein (hspc210)	d.82.3 Hypothetical protein c14orf129, hspc210	1	1
3.30.2290.10 PmbA/TldD superfamily	d.283.1 Putative modulator of DNA gyrase, PmbA/TldD	8	3
3.30.2310.30	d.243.1 Colicin D/E5 nuclease domain	10	9
3.30.2350.10 Pseudouridine synthase	d.265.1 Pseudouridine synthase	55	44
3.30.2400.10 Major capsid protein gp5	d.183.1 Major capsid protein gp5	35	27
3.30.2420.10 TonB	d.212.1 TolA/TonB C-terminal domain	9	12
3.40.5.50	d.344.1 PriA/YqbF domain	11	20
3.40.47.10	c.95.1 Thiolase-like	1871	576
3.40.50.450	c.129.1 MCP/YpsA-like	301	29
3.40.50.620 HUPs	c.26.1 Nucleotidylyl transferase	1485	303
3.40.50.700 NADH:ubiquinone oxidoreductase-like, 20kDa subunit	e.19.1 HydA/Nqo6-like	158	34
3.40.50.740	c.81.1 Formate dehydrogenase/DMSO reductase, domains 1-3	105	94
3.40.50.1000 HAD superfamily/HAD-like	c.108.1 HAD-like	1252	296
3.40.50.1100	c.79.1 Tryptophan synthase beta subunit-like PLP-dependent enzymes	1114	197
3.40.50.1170 L-asparaginase, N-terminal domain	c.88.1 Glutaminase/Asparaginase	208	71
3.40.50.1260	c.86.1 Phosphoglycerate kinase	152	19
3.40.50.1370 Aspartate/ornithine carbamoyltransferase	c.78.1 Aspartate/ornithine carbamoyltransferase	762	332
3.40.50.1390	c.53.1 Resolvase-like	75	16
3.40.50.1400	c.92.1 Chelatase	178	20
3.40.50.1780	c.96.1 Fe-only hydrogenase	7	6
3.40.50.1860	c.78.2 Aspartate/glutamate racemase	189	11
3.40.50.1910	e.25.1 Sec1/munc18-like (SM) proteins	29	6
3.40.50.1980 Nitrogenase molybdenum iron protein domain	c.92.2 "Helical backbone" metal receptor	1040	110
3.40.50.2000 Glycogen Phosphorylase B;	c.87.1 UDP-Glycosyltransferase/glycogen phosphorylase	1455	268
3.40.50.2030	e.26.1 Prismane protein-like	123	48
3.40.50.2300	c.93.1 Periplasmic binding protein-like I	2387	158
3.40.50.10050 Translation initiation factor IF- 2, domain 3	c.20.1 Initiation factor IF2/eIF5b, domain 3	13	3
3.40.50.10090	c.113.1 HemD-like	32	4
3.40.50.10180	c.118.1 GckA/TtuD-like	5	2
3.40.50.10190 BRCT domain	c.15.1 BRCT domain	323	56
3.40.50.10210	c.39.1 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)	54	29
3.40.50.10330 Probable inorganic polyphosphate/atp-NAD kinase; domain 1	e.52.1 NAD kinase/diacylglycerol kinase-like	141	31
3.40.50.10360 Hypothetical protein TT1679	c.140.1 TTHA0583/YokD-like	3	6
3.40.50.10440 Dihydroxyacetone kinase; domain 1	c.119.1 DAK1/DegV-like	40	17
3.40.50.10490 Glucose-6-phosphate isomerase like protein; domain 1	c.80.1 SIS domain	903	88
3.40.50.10540 Crotonobetainyl-coa:carnitine coa-transferase; domain 1	c.123.1 CoA-transferase family III (CaiB/BaiF)	92	64
3.40.50.10580 ATPase, V1 complex, subunit F	c.149.1 AtpF-like	26	8
3.40.50.10620 PH0156-like domains	e.67.1 PH0156-like	2	2
3.40.50.10640 SSO1389-like	e.72.1 SSO1389-like	3	2
3.40.50.10780 Dipeptide transport protein	c.99.1 Dipeptide transport protein	5	5
3.40.50.10800 NadA-like	c.145.1 NadA-like	54	1
3.40.50.10830 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)	c.127.1 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)	54	30
3.40.50.10840 Putative sugar-binding, N-terminal domain	c.146.1 YgbK-like	6	2
3.40.50.10860 Leucine Dehydrogenase, chain A, domain 1	c.58.1 Aminoacid dehydrogenase-like, N-terminal domain	447	215
3.40.50.10880	e.50.1 AF1104-like	4	6
3.40.50.10940	c.85.1 FucI/AraA N-terminal and middle domains	33	12
3.40.50.11210	e.55.1 Rap/Ran-GAP	6	4
3.40.50.11220	c.152.1 CbiG N-terminal domain-like	2	2
3.40.50.11540	c.142.1 Nqo1 FMN-binding domain-like	15	4
3.40.50.11550	c.150.1 EreA/ChaN-like	5	9
3.40.50.12290	c.147.1 CAC2185-like	2	2
3.40.50.12780	e.23.1 Acetyl-CoA synthetase-like	202	22
3.40.120.10 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	c.84.1 Phosphoglucomutase, first 3 domains	221	84
3.40.190.10 Periplasmic binding protein-like II	c.94.1 Periplasmic binding protein-like II	4548	641
3.40.390.10 Collagenase (Catalytic Domain)	d.92.1 Metalloproteases ("zincins"), catalytic domain	775	474
3.40.420.10 Ricin (A subunit), domain 1	d.165.1 Ribosome inactivating proteins (RIP)	305	102
3.40.600.10 DNA mismatch repair MutH/Restriction endonuclease, type II	c.52.1 Restriction endonuclease-like	130	229
3.40.605.10 Aldehyde Dehydrogenase; Chain A, domain 1	c.82.1 ALDH-like	1248	165
3.40.630.50 AF0625-like	c.56.7 AF0625-like	4	4
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain)	c.67.1 PLP-dependent transferases	2388	730
3.40.718.10 Isopropylmalate Dehydrogenase	c.77.1 Isocitrate/Isopropylmalate dehydrogenase-like	387	126
3.40.1080.10 Glutaconate Coenzyme A-transferase	c.124.1 NagB/RpiA/CoA transferase-like	141	166
3.40.1090.10 Cytosolic phospholipase A2 catalytic domain	c.19.1 FabD/lysophospholipase-like	13	7
3.40.1130.10 Glycerol-3-phosphate (1)-acyltransferase	c.112.1 Glycerol-3-phosphate (1)-acyltransferase	2	2
3.40.1170.20 tRNA intron endonuclease, N-terminal domain	d.75.1 tRNA-intron endonuclease N-terminal domain-like	43	24
3.40.1310.20	d.89.1 Origin of replication-binding domain, RBD-like	69	48
3.40.1360.10	e.13.1 DNA primase core	51	16
3.40.1360.20 Toprim domain	c.136.1 Toprim domain	6	8
3.40.1370.10	c.22.1 Ribosomal protein L4	130	89
3.40.1390.30 NIF3 (NGG1p interacting factor 3)-like	c.135.1 NIF3 (NGG1p interacting factor 3)-like	136	18
3.40.1570.10 HemS/ChuS/ChuX like domains	e.62.1 Heme iron utilization protein-like	37	5
3.40.1610.10 CV3147-like domain	e.73.1 CV3147-like	2	2
3.40.1620.10 YefM-like domain	d.306.1 YefM-like	55	8
3.40.1640.10 PSTPO5379-like	d.382.1 PSTPO5379-like	3	2
3.40.1670.10 UbiD C-terminal domain-like	d.333.1 UbiD C-terminal domain-like	22	3
3.40.1700.10 DNA integrity scanning protein, DisA, N-terminal domain	d.320.1 YojJ-like	21	3
3.40.1740.10 VC0467-like	d.310.1 VC0467-like	8	7
3.40.1770.10 Urocanase superfamily	e.51.1 Urocanase	16	8
3.40.1780.10 QueA-like	e.53.1 QueA-like	5	3
3.40.1830.10 Thermophilic metalloprotease (M29)	e.60.1 Thermophilic metalloprotease-like	12	6
3.50.14.10 Replication terminator Tus, domain 1 superfamily/Replication terminator Tus	e.2.1 Replication terminator protein (Tus)	8	4
3.50.20.10 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B	d.155.1 Pyruvoyl-dependent histidine and arginine decarboxylases	47	35
3.50.20.20	d.322.1 PHP14-like	7	13
3.50.50.60 FAD/NAD(P)-binding domain	c.3.1 FAD/NAD(P)-binding domain	2603	643
3.50.70.10	d.36.1 Chalcone isomerase	25	18
3.60.70.12 L-amino peptidase D-ALA esterase/amidase	d.154.1 DmpA/ArgJ-like	86	16
3.60.140.10 CNF1/YfiH-like putative cysteine hydrolases	d.194.1 CNF1/YfiH-like putative cysteine hydrolases	10	13
3.65.10.10 Enolpyruvate transferase domain	d.68.2 EPT/RTPC-like	434	68
3.70.10.10	d.131.1 DNA clamp	272	168
3.80.10.10 Ribonuclease Inhibitor	c.10.2 L domain-like	606	100
3.90.50.10 Photosynthetic Reaction Center, subunit H, domain 2	b.41.1 PRC-barrel domain	127	63
3.90.70.10 Cysteine proteinases	d.3.1 Cysteine proteinases	666	410
3.90.79.30	c.52.4 TBP-interacting protein-like	1	1
3.90.148.10 Adenovirus DNA-binding, C-terminal domain superfamily/Adenovirus DNA-binding, zinc binding domain	g.51.1 Zn-binding domains of ADDBP	8	12
3.90.176.10 Toxin ADP-ribosyltransferase; Chain A, domain 1	d.166.1 ADP-ribosylation	181	159
3.90.180.10 Medium-chain alcohol dehydrogenases, catalytic domain	b.35.1 GroES-like	771	374
3.90.209.20	b.19.1 Viral protein domain	916	143
3.90.215.10 Gamma Fibrinogen, chain A, domain 1	d.171.1 Fibrinogen C-terminal domain-like	259	89
3.90.220.10 Adenine-n6-DNA-methyltransferase Taqi, Chain A, domain 2	d.287.1 DNA methylase specificity domain	24	28
3.90.228.20	c.91.1 PEP carboxykinase-like	108	43
3.90.340.10 Nitric Oxide Synthase; Chain A, domain 1	d.174.1 Nitric oxide (NO) synthase oxygenase domain	923	248
3.90.480.10 Sulfite Reductase Hemoprotein;Domain 2	d.58.36 Nitrite/Sulfite reductase N-terminal domain-like	21	42
3.90.540.10 Colicin/pyocin, DNase domain	d.4.1 His-Me finger endonucleases	68	82
3.90.650.10 PurM-like C-terminal domain	d.139.1 PurM C-terminal domain-like	91	43
3.90.770.10 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2	d.179.1 Substrate-binding domain of HMG-CoA reductase	112	46
3.90.810.10 CRIB domain	a.68.1 Wiscott-Aldrich syndrome protein, WASP, C-terminal domain	12	2
3.90.820.10 Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	d.100.2 MbtH-like	15	2
3.90.840.10 Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain	f.9.1 Perfringolysin	15	7
3.90.920.10 DNA primase, PRIM domain	d.264.1 Prim-pol domain	4	9
3.90.930.1	b.76.1 Outer surface protein	33	5
3.90.1010.10	d.224.1 SufE/NifU	40	15
3.90.1160.10	d.182.1 Baseplate structural protein gp11	3	3
3.90.1170.20 Quinolinate phosphoribosyl transferase, N-terminal domain	d.41.2 Nicotinate/Quinolinate PRTase N-terminal domain-like	162	46
3.90.1180.10 Ribosomal protein L13	c.21.1 Ribosomal protein L13	349	90
3.90.1310.10 Penicillin-binding protein 2a (Domain 2)	d.175.1 Penicillin binding protein dimerisation domain	90	20
3.90.1320.10 Outer-capsid protein sigma 3, large lobe	d.196.1 Outer capsid protein sigma 3	5	15
3.90.1340.10 Phage tail collar domain	d.231.1 Receptor-binding domain of short tail fibre protein gp12	5	2
3.90.1510.10 Glycerate kinase, domain 2	c.141.1 Glycerate kinase I	4	2
3.90.1520.10 H-NOX domain	d.278.1 Ligand-binding domain in the NO signalling and Golgi transport	83	14
3.90.1530.10 Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	d.268.1 ParB/Sulfiredoxin	16	19
3.90.1640.10 inorganic pyrophosphatase (n-terminal core)	c.107.1 DHH phosphoesterases	37	17
3.90.1680.10 SOS response associated peptidase-like	d.303.1 BB1717-like	7	7
3.90.1750.10 Hect, E3 ligase catalytic domains	d.148.1 Hect, E3 ligase catalytic domain	20	7
3.90.1760.10 Anthrax toxin, edema factor, central domain	e.41.1 Adenylylcyclase toxin (the edema factor)	65	19
3.90.1780.10 Trimeric adhesin	b.144.1 Trimeric adhesin	10	6
3.90.1840.10 Major capsid protein	e.42.1 L-A virus major coat protein	1	2
3.90.1860.10 tRNA-splicing ligase RtcB	d.261.1 Hypothetical protein PH1602	1	2
3.100.10.10	c.12.1 Ribosomal proteins L15p and L18e	398	126
4.10.40.10	g.3.6 omega toxin-like	9	68
4.10.110.10 Spasmolytic Protein, domain 1	g.16.1 Trefoil	38	20
4.10.400.10 Low-density Lipoprotein Receptor	g.12.1 LDL receptor-like module	29	25
4.10.650.10 Metallothionein domain superfamily, yeast	g.46.1 Metallothionein	5	28
4.10.860.10 UVR domain	a.2.9 C-terminal UvrC-binding domain of UvrB	16	4
4.10.1000.10 Zinc finger, CCCH-type	g.66.1 CCCH zinc finger	5	6
4.10.1090.10 Endosialidase, domain 4	b.108.1 Phage fibre proteins	27	29
4.10.1150.10 AF2212/PG0164-like	b.129.2 AF2212/PG0164-like	2	3

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CATH / SCOP Mapping

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