CATH
Christine Orengo
CATH provides information on protein structures that are related by evolution. Protein structures (from the PDB) are chopped into structural domains then grouped into evolutionary superfamilies.
DomSerf
David Jones
Structural predictions using pDomTHREADER and PSI-BLAST using CATH domains and the PDB
FUGUE (CATH-based)
Tom L Blundell
Homology recognition using environment-specific substitution tables and structure-dependent gap penalties against the TOCCATA database of annotated structural profiles based on SCOP and CATH.
FUGUE (SCOP-based)
Tom L Blundell
Homology recognition using environment-specific substitution tables and structure-dependent gap penalties against the TOCCATA database of annotated structural profiles based on SCOP and CATH.
Gene3D
Christine Orengo
Gene3D provides predicted CATH structural domain annotations for major protein sequence databases and sequence genomes using an accurate and sensitive automated homologue recognition protocol.
pDomTHREADER
David Jones
Protein fold predictions using pDomTHREADER based on the CATH domain library
PHYRE2
Michael J E Sternberg, Lawrence A Kelley
Phyre2 - Protein Homology/analogY Recognition Engine V 2.0
Webserver for protein structure prediction based on SCOP and PDB, and HMM-HMM alignment techniques for remote homology detection.
SCOP
Alexey Murzin
SCOP is a database of relationships amongst proteins of known structure. Like the Linnaean taxonomy, it groups hierarchically protein domains by their near and far homology and structural similarity.
SUPERFAMILY
Julian Gough
The SUPERFAMILY database provides SCOP structural domain annotation of protein sequences at the superfamily and family levels using a library of HMMs.
VIVACE
Tom L Blundell
Comparative modelling pipeline based on FUGUE, TOCCATA and MODELLER employing conformation-sensitive multiple template selection.